PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884964.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TALE
Protein Properties Length: 650aa    MW: 71446.9 Da    PI: 6.205
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884964.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-094264631954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +e+  LA+++gLt++qV +WF N R +
  XP_015884964.1 426 FEHflHPYPKDSEKLMLARQTGLTKNQVANWFINARVR 463
                     665559******************************88 PP
2BELL114.74.9e-37289360172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erqel++kk+kLls+l+e+d rYkqy++q+q+v+s F+ vag g+a+pYt+lAl++iS hFrcL+dai++qi
  XP_015884964.1 289 ERQELENKKTKLLSMLDELDGRYKQYYHQMQIVVSFFDNVAGPGAAEPYTALALRTISCHFRCLRDAISGQI 360
                     79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-57216358IPR006563POX domain
PfamPF075268.6E-48222357IPR006563POX domain
PROSITE profilePS5007112.438404467IPR001356Homeobox domain
CDDcd000861.58E-12407468No hitNo description
SMARTSM003892.9E-9407471IPR001356Homeobox domain
SuperFamilySSF466894.28E-17408474IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27410473IPR009057Homeodomain-like
PfamPF059201.0E-16424463IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MATHLSNLSN PKYDLLTPYP GDEKFASYPK PPFGPGNMMM YLNQASPAGS YSMIMPVGST  60
SSNNCVDSVE GRNEMMFIPP MGDPGGSSAN GDTLAVPRTQ LPGSLNGEQN VHYQGLSLSL  120
GTQIPSAVSL PSFPYQCPNP NLSSVLGTCI PMSVNDVLSC KDDQSNPNGE LRNVEYLTSG  180
FFGGGHNAIK TEGFYNQLCS VSSKEMNIGQ YPFEPSGVAH NILNTKYLKA AQQLLDEVVN  240
VRKALKQPGL NKQGIGSETD GKSNHRSLQI SSDPSESSTN SSSELSPAER QELENKKTKL  300
LSMLDELDGR YKQYYHQMQI VVSFFDNVAG PGAAEPYTAL ALRTISCHFR CLRDAISGQI  360
QVIQKSLGEQ GTPANGQGGA IPRLRYVDQQ LRQQKAVQQL GIMRNAWRPQ RGLPESSVSI  420
LRAWLFEHFL HPYPKDSEKL MLARQTGLTK NQVANWFINA RVRLWKPMVE EMYKEEFTDA  480
ELNSKLLAEN ALNEARESQR TGTNIDMDQV QDRKAELSGP TGRIAVQNDS FHEGNTRDSG  540
MPKLQGDHSQ KNLYNMDETF RISQNGDRNL MANPATYDVS ELGNFAVGNQ VSLSLELRHC  600
ESDGFSTSGG SHVRGNDAAA ATASLDYHCV DAGQQQCRFS NPHLLHDFVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-16413471563Homeobox protein Meis2
4xrm_B3e-16413471563Homeobox protein Meis2
4xrs_A2e-16413470158Homeobox protein Meis1
4xrs_B2e-16413470158Homeobox protein Meis1
5bng_A3e-16413471159Homeobox protein Meis2
5bng_B3e-16413471159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884964.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884961.10.0BEL1-like homeodomain protein 7
RefseqXP_015884962.10.0BEL1-like homeodomain protein 7
RefseqXP_015884964.10.0BEL1-like homeodomain protein 7
RefseqXP_015884965.10.0BEL1-like homeodomain protein 7
RefseqXP_024930331.10.0BEL1-like homeodomain protein 7
SwissprotQ9FWS91e-116BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLA0A2N9IHG60.0A0A2N9IHG6_FAGSY; Uncharacterized protein
STRINGXP_004291834.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-109BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]