PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884937.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 339aa    MW: 36710 Da    PI: 7.6073
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884937.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH154.4e-052482861255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  XP_015884937.1 248 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 286
                     7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.306236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-9246290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-5246290No hitNo description
Gene3DG3DSA:4.10.280.101.6E-8250291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MVPDMGFHWT DNAGAQSFSS QSAHDLQQTK IKEEQPFPKF TELLNGPSNM DEYYFLPQMI  60
KNEHKDLSEL SEKLLLKTLT SSCQINGHQI STGDFLSNNN NMNGAVGVHY GRGQFSQIYP  120
SINISNLNQS SSSSSSSPTT STALSSSCSS LNMSLRALDH LASSTLSGSS LDHHNLGGVN  180
SSFGLDQMPQ PHHRLSCSAH RKVVSSFNNE VIEAKRPAGS SMETKGTQAS QKKSRLESRT  240
PCPPFKVRKE KLGDRIAALQ QLVAPFGKTD TASVLMEAIG YIKFLQNQVE GPKGNGNEEA  300
KRDLRSQGLC LVPLSCMSYM TGEGGGGSVW PPSNFGGET
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884937.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866079.20.0transcription factor bHLH110-like isoform X1
TrEMBLE0CQH41e-109E0CQH4_VITVI; Uncharacterized protein
STRINGVIT_18s0001g12970.t011e-110(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-42bHLH family protein