PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015884907.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

SRS

Protein Properties

Length: 347aa MW: 37933.4 Da PI: 6.8414

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015884907.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223.4	4.6e-69	118	275	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkrelkskkqsals 87 g+++CqdCGnqakkdC h RCRtCCksrgf+C thvkstWvpaakrrerqq a +++++++++ + ++skr+r +++++++l+ XP_015884907.1 118 GGGMNCQDCGNQAKKDCIHLRCRTCCKSRGFQCPTHVKSTWVPAAKRRERQQSVAELQQQQQQQQqhqqqqqqqfRVDNSKRQR--ENQESASLA 210 5789**********************************************99998888777665555544433333334444..558889999 PP DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +t+l++++s el ++P+ev+s+avfrcvrvs++dd ++++aYqtav+igGhvf+GiLydqG++ XP_015884907.1 211 CTRLPTTTSGLELGS-QFPTEVNSPAVFRCVRVSTMDDVDDQYAYQTAVNIGGHVFRGILYDQGPD 275 99999977765.5*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.4E-67	120	275	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.9E-27	122	164	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.2E-26	226	274	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MAGFFCLGGG KEAPNNKQEE EEDQRVQQQQ GVGGGGNSLF LYRNEEIYNN NNNKGFEIWP 60 QYHQQQQNLS SYYSFGVGPS RIRSFNINND SSDESLRFGF TVMRPSGGLG GSGSGSGGGG 120 MNCQDCGNQA KKDCIHLRCR TCCKSRGFQC PTHVKSTWVP AAKRRERQQS VAELQQQQQQ 180 QQQHQQQQQQ QFRVDNSKRQ RENQESASLA CTRLPTTTSG LELGSQFPTE VNSPAVFRCV 240 RVSTMDDVDD QYAYQTAVNI GGHVFRGILY DQGPDGHYST GGEGSSGRGG DDDGVQQLNL 300 ITGGTTTTSS SGTHTGANPS SLLDPSLYPT PLNAFMAGTQ FFPPPRP

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MAGFFCLGGG KEAPNNKQEE EEDQRVQQQQ GVGGGGNSLF LYRNEEIYNN NNNKGFEIWP  60
QYHQQQQNLS SYYSFGVGPS RIRSFNINND SSDESLRFGF TVMRPSGGLG GSGSGSGGGG  120
MNCQDCGNQA KKDCIHLRCR TCCKSRGFQC PTHVKSTWVP AAKRRERQQS VAELQQQQQQ  180
QQQHQQQQQQ QFRVDNSKRQ RENQESASLA CTRLPTTTSG LELGSQFPTE VNSPAVFRCV  240
RVSTMDDVDD QYAYQTAVNI GGHVFRGILY DQGPDGHYST GGEGSSGRGG DDDGVQQLNL  300
ITGGTTTTSS SGTHTGANPS SLLDPSLYPT PLNAFMAGTQ FFPPPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015884907.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015884907.1	0.0	protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	7e-86	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	W9SFH8	1e-125	W9SFH8_9ROSA; Uncharacterized protein
STRING	XP_010105273.1	1e-126	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	3e-73	SHI-related sequence 5

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]