PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884823.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family BBR-BPC
Protein Properties Length: 336aa    MW: 37527.5 Da    PI: 9.9378
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind399.73.8e-12213361301
       GAGA_bind   1 mdddgsre..rnkg.yyepa...aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89 
                     md+ ++re  r+kg +y+ a     +++   +q+m+++aerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erdn++++l++++n
  XP_015884823.1   1 MDEGAHREngRHKGeQYKTAqgqWLMHQPSMKQIMAIMAERDAAIQERNLAVSEKKAALAERDMAFLQRDAAIAERNNAVLERDNAIATLQYRDN 95 
                     9999999899*******966553345556667*************************************************************** PP

       GAGA_bind  90 sla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv 178
                     sla    s++p+g+q+++g+k++++ qq +++ +++++ ++ +re++++++lpi+  a+ea ++++ k+      +ke k  +++kk +k+ +kv
  XP_015884823.1  96 SLAngnmSSCPPGCQISRGVKHMHHPQQhMNHmQHMNEASYSTREMHTTDSLPISPDASEAAKSRRAKR------TKEAKPISPNKKASKPPRKV 184
                     99999999*******************96566789999****************998887777766664......34444444444444444444 PP

       GAGA_bind 179 kkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPL 244
                     k+e++d +                             sk+++k +dl+ln+v++Dest+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPL
  XP_015884823.1 185 KRENEDLNkmtfskshewkgghdmvgagddlnkqlvvSKSDWKGQDLGLNQVAYDESTMPAPVCSCTGVLRQCYKWGNGGWQSSCCTTTMSMYPL 279
                     4444442224444556899**************************************************************************** PP

       GAGA_bind 245 PvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     P+++++r+aR++grKmS++af+klL++LaaeG+dlsn+vDLkdhWAkHGtn+++ti+
  XP_015884823.1 280 PAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNAVDLKDHWAKHGTNRYITIK 336
                     ********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012267.2E-1771336IPR010409GAGA-binding transcriptional activator
PfamPF062171.9E-1041336IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDEGAHRENG RHKGEQYKTA QGQWLMHQPS MKQIMAIMAE RDAAIQERNL AVSEKKAALA  60
ERDMAFLQRD AAIAERNNAV LERDNAIATL QYRDNSLANG NMSSCPPGCQ ISRGVKHMHH  120
PQQHMNHMQH MNEASYSTRE MHTTDSLPIS PDASEAAKSR RAKRTKEAKP ISPNKKASKP  180
PRKVKRENED LNKMTFSKSH EWKGGHDMVG AGDDLNKQLV VSKSDWKGQD LGLNQVAYDE  240
STMPAPVCSC TGVLRQCYKW GNGGWQSSCC TTTMSMYPLP AVPNKRHARV GGRKMSGSAF  300
NKLLSRLAAE GHDLSNAVDL KDHWAKHGTN RYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884823.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884822.10.0protein BASIC PENTACYSTEINE6
RefseqXP_015884824.10.0protein BASIC PENTACYSTEINE6
RefseqXP_015884825.10.0protein BASIC PENTACYSTEINE6
RefseqXP_015884826.10.0protein BASIC PENTACYSTEINE6
RefseqXP_024930418.10.0protein BASIC PENTACYSTEINE6
RefseqXP_024930420.10.0protein BASIC PENTACYSTEINE6
RefseqXP_024930421.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-157BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLW9RR460.0W9RR46_9ROSA; Uncharacterized protein
STRINGXP_010105257.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-153basic pentacysteine 6