PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015884741.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Dof

Protein Properties

Length: 362aa MW: 39192.5 Da PI: 9.6057

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015884741.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.8	4.8e-38	151	209	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + l+cprCds+ntkfCyynny+lsqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s XP_015884741.1 151 DPLPCPRCDSNNTKFCYYNNYNLSQPRHFCKSCRRYWTQGGTLRDIPVGGGSRKNSKRS 209 6789***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-23	126	200	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-33	152	207	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.301	153	207	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	155	191	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MFILAVNHHI LLYIPNQKAK AHSHKIPAEP RVLQHVRNRI LSAAPEHHLK SAHARSLSLS 60 LTLSHIEQRH AIKRCRASLP NFILSQIFCL FLFLSFTPLK TNTAERSKSI STISLKTEPK 120 KKKKMPSDSG DNRRSVKAQA QSMEHPPPQS DPLPCPRCDS NNTKFCYYNN YNLSQPRHFC 180 KSCRRYWTQG GTLRDIPVGG GSRKNSKRSR SSSSSSSSSS SSLTNTQDHL VPPIPCKSVP 240 VLPCAKPEMS SCDDLNLNEN VNGGAGFTSL LGCSSQPSGL LALGGYGLGL GQGMDEMGFG 300 YGRGGVWPFL EVGEFGNGSD GSGGSSGCNT TWQMNGADGG LVEGDCFAWP DLAISMPGKG 360 MK

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MFILAVNHHI LLYIPNQKAK AHSHKIPAEP RVLQHVRNRI LSAAPEHHLK SAHARSLSLS  60
LTLSHIEQRH AIKRCRASLP NFILSQIFCL FLFLSFTPLK TNTAERSKSI STISLKTEPK  120
KKKKMPSDSG DNRRSVKAQA QSMEHPPPQS DPLPCPRCDS NNTKFCYYNN YNLSQPRHFC  180
KSCRRYWTQG GTLRDIPVGG GSRKNSKRSR SSSSSSSSSS SSLTNTQDHL VPPIPCKSVP  240
VLPCAKPEMS SCDDLNLNEN VNGGAGFTSL LGCSSQPSGL LALGGYGLGL GQGMDEMGFG  300
YGRGGVWPFL EVGEFGNGSD GSGGSSGCNT TWQMNGADGG LVEGDCFAWP DLAISMPGKG  360
MK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015884741.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015884741.1	0.0	dof zinc finger protein DOF3.4
TrEMBL	A0A2P5FN07	3e-73	A0A2P5FN07_TREOI; Zinc finger, Dof-type
STRING	XP_010263782.1	2e-71	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-38	OBF binding protein 1