PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884654.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 103aa    MW: 11494.8 Da    PI: 9.452
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884654.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-091861344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a + + ++   +W  +ar +g g+t++++k ++
   XP_015884654.1 18 SWTPKQNKLFEKALAVFDKDtpdRWQNVARAVG-GKTAEEVKRHY 61
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.5511165IPR017877Myb-like domain
SMARTSM007174.6E-71567IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-41664IPR009057Homeodomain-like
SuperFamilySSF466893.21E-131773IPR009057Homeodomain-like
PfamPF002497.1E-71861IPR001005SANT/Myb domain
CDDcd001671.01E-61961No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MASGSLSYSR SSSSSNSSWT PKQNKLFEKA LAVFDKDTPD RWQNVARAVG GKTAEEVKRH  60
YEILVQDLMN IESGQFPIPD YKSTGSNHGG YGDEQRLLKN LKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-3411103392RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884654.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884654.15e-72protein RADIALIS-like 3
SwissprotQ1A1737e-39RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2P5AWE89e-51A0A2P5AWE8_PARAD; Octamer-binding transcription factor
STRINGXP_010102082.11e-50(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-39RAD-like 6