PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015884549.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | LBD | ||||||||
Protein Properties | Length: 250aa MW: 28303.2 Da PI: 7.5474 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 109.8 | 2e-34 | 16 | 114 | 2 | 100 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 CaaC+++r++C++dC+lapyfp++++++f n++klFG +n+lkl+k+l++ ++++am+s++++A+ ra dPv G++++il+l+ ++ +el++ XP_015884549.1 16 CAACRYQRKRCPPDCPLAPYFPSNRENDFHNARKLFGINNMLKLIKNLDPPNKHIAMKSIIFQANKRALDPVGGCHRIILDLELLIQAYTSELQH 110 *****************************************************************************************999998 PP DUF260 97 lkee 100 + ++ XP_015884549.1 111 VLHK 114 7665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.583 | 14 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.8E-32 | 16 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MRNTANSKNR KLETVCAACR YQRKRCPPDC PLAPYFPSNR ENDFHNARKL FGINNMLKLI 60 KNLDPPNKHI AMKSIIFQAN KRALDPVGGC HRIILDLELL IQAYTSELQH VLHKLDLCRK 120 KALSGPFPMP PSCGYPLQPP VGTHHQALPY NNNNLQQQHT DTCLPFGFLQ PVEEEHGLQE 180 NYYFGVDVVL NDGEAVSVVD WKVKEEKQTD FNLDPVGENN QTHRLHSTGT IQSSDKAVSE 240 EDVNATLQKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-16 | 16 | 108 | 12 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-16 | 16 | 108 | 12 | 104 | LOB family transfactor Ramosa2.1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015884549.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015884549.1 | 0.0 | LOB domain-containing protein 7-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-34 | LOB domain-containing protein 22 |