PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015884293.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

NAC

Protein Properties

Length: 274aa MW: 30623.5 Da PI: 6.9937

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015884293.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	87.7	2.1e-27	11	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppG+rF P+de+l+++yL k ++ + + i+e+++y ++P +Lp+ + ++++F+ + + +++r +r +ksgyW XP_015884293.1 11 LPPGCRFYPSDEQLLCYYLSGKNSDPNsghgarYG-CDLISELELYGYDPFELPEracysyG--YGGMKTHWFCYTVRVV-KESRGRRRAKSGYW 101 79******************9988867665333.368**********954555322..2444555555555544.34677888899* PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapk.gektdWvmheyrl 128 + g+ +ev+ + ++ + g++++++fy g++pk +++tdWv+ ey+l XP_015884293.1 102 RRMGRAREVVGSgGKVVLGTRTSFIFYLGNSPKtAVRTDWVLYEYAL 148 ********99455668*****997766167*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-33	8	164	IPR003441	NAC domain
PROSITE profile	PS51005	36.629	11	164	IPR003441	NAC domain
Pfam	PF02365	9.4E-16	12	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MGEPKATSLT LPPGCRFYPS DEQLLCYYLS GKNSDPNSGH GARYGCDLIS ELELYGYDPF 60 ELPERACYSY GYGGMKTHWF CYTVRVVKES RGRRRAKSGY WRRMGRAREV VGSGGKVVLG 120 TRTSFIFYLG NSPKTAVRTD WVLYEYALID RPKASFVLCR VFVKSHGRNS TSENVLNSCA 180 EESASAFRHI GIQTSEINSF GRLNDMSRYP VSPDSEPAQI MTGPVTVSSI QFPSDIQPKE 240 QVTSSSLVSL NALEAEHLLS ILKDDFIELD DLVD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-25	7	165	13	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-25	7	165	13	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-25	7	165	13	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-25	7	165	13	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-25	7	165	16	169	NAC domain-containing protein 19
3swm_B	1e-25	7	165	16	169	NAC domain-containing protein 19
3swm_C	1e-25	7	165	16	169	NAC domain-containing protein 19
3swm_D	1e-25	7	165	16	169	NAC domain-containing protein 19
3swp_A	1e-25	7	165	16	169	NAC domain-containing protein 19
3swp_B	1e-25	7	165	16	169	NAC domain-containing protein 19
3swp_C	1e-25	7	165	16	169	NAC domain-containing protein 19
3swp_D	1e-25	7	165	16	169	NAC domain-containing protein 19
4dul_A	1e-25	7	165	13	166	NAC domain-containing protein 19
4dul_B	1e-25	7	165	13	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015884293.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015884292.1	0.0	NAC domain-containing protein 72-like
Refseq	XP_015884293.1	0.0	NAC domain-containing protein 72-like
TrEMBL	A0A2P6Q0J5	1e-103	A0A2P6Q0J5_ROSCH; Putative transcription factor NAM family
STRING	XP_009359865.1	1e-109	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-29	NAC family protein