PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015884292.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NAC | ||||||||
Protein Properties | Length: 274aa MW: 30623.5 Da PI: 6.9937 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 87.7 | 2.1e-27 | 11 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppG+rF P+de+l+++yL k ++ + + i+e+++y ++P +Lp+ + ++++F+ + + +++r +r +ksgyW XP_015884292.1 11 LPPGCRFYPSDEQLLCYYLSGKNSDPNsghgarYG-CDLISELELYGYDPFELPEracysyG--YGGMKTHWFCYTVRVV-KESRGRRRAKSGYW 101 79********************9988867665333.368**************954555322..2444555555555544.34677888899*** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapk.gektdWvmheyrl 128 + g+ +ev+ + ++ + g++++++fy g++pk +++tdWv+ ey+l XP_015884292.1 102 RRMGRAREVVGSgGKVVLGTRTSFIFYLGNSPKtAVRTDWVLYEYAL 148 **********99455668*********997766167*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-33 | 8 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.629 | 11 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.4E-16 | 12 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MGEPKATSLT LPPGCRFYPS DEQLLCYYLS GKNSDPNSGH GARYGCDLIS ELELYGYDPF 60 ELPERACYSY GYGGMKTHWF CYTVRVVKES RGRRRAKSGY WRRMGRAREV VGSGGKVVLG 120 TRTSFIFYLG NSPKTAVRTD WVLYEYALID RPKASFVLCR VFVKSHGRNS TSENVLNSCA 180 EESASAFRHI GIQTSEINSF GRLNDMSRYP VSPDSEPAQI MTGPVTVSSI QFPSDIQPKE 240 QVTSSSLVSL NALEAEHLLS ILKDDFIELD DLVD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-25 | 7 | 165 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-25 | 7 | 165 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-25 | 7 | 165 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-25 | 7 | 165 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-25 | 7 | 165 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-25 | 7 | 165 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-25 | 7 | 165 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-25 | 7 | 165 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-25 | 7 | 165 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-25 | 7 | 165 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-25 | 7 | 165 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-25 | 7 | 165 | 16 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-25 | 7 | 165 | 13 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-25 | 7 | 165 | 13 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015884292.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015884292.1 | 0.0 | NAC domain-containing protein 72-like | ||||
Refseq | XP_015884293.1 | 0.0 | NAC domain-containing protein 72-like | ||||
TrEMBL | A0A2P6Q0J5 | 1e-103 | A0A2P6Q0J5_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_009359865.1 | 1e-109 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13001 | 26 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-29 | NAC family protein |