PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015884286.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 429aa MW: 49221.6 Da PI: 6.6314

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015884286.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5e-05	167	190	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H r H XP_015884286.1 167 YVCGVCGRKCKTNLDLKKHFRQlH 190 9******************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	8.8E-7	87	157	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.99	167	195	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0092	167	190	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	169	190	IPR007087	Zinc finger, C2H2
CDD	cd06167	1.99E-11	181	321	No hit	No description
Gene3D	G3DSA:3.40.50.1010	8.8E-7	252	318	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MNPLCNAIAV GSLPFKPLLP PPLFCCPHTH TNKLHSSHSS FLRLLDLPSN TYSATLPDRF 60 NFRWPIRACH AADIDMVKNK QGVYAPKQKK VVILWDLDNK PPRGPPYQAA MALKQLAQRF 120 GDVVDVSAYA NRHAFIHMPQ WVLEQRRERK QLDILERKGV VSPSELYVCG VCGRKCKTNL 180 DLKKHFRQLH ERERQKKLNR MRSLKGRKRQ RYKERHISGN HKYNEAARTI VTPKVGYGLA 240 SELRRAGVFV KTVQDKPQAA DWALKRQMQH SMSRGIDWLF LVSDDSDFSE MLRRAREANL 300 GTVVVGDWDR ALGRHADVWV SWMGVENGEV SEEDLVPRNR RRSGIYDGDG NGLFSVKGLD 360 DDDDGDDGHL DSVLDELVVA RSQFNGMRIS VFSEGEEEEV DVDFMTEEID EDYLLEDSDD 420 EEMDEDENF

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MNPLCNAIAV GSLPFKPLLP PPLFCCPHTH TNKLHSSHSS FLRLLDLPSN TYSATLPDRF  60
NFRWPIRACH AADIDMVKNK QGVYAPKQKK VVILWDLDNK PPRGPPYQAA MALKQLAQRF  120
GDVVDVSAYA NRHAFIHMPQ WVLEQRRERK QLDILERKGV VSPSELYVCG VCGRKCKTNL  180
DLKKHFRQLH ERERQKKLNR MRSLKGRKRQ RYKERHISGN HKYNEAARTI VTPKVGYGLA  240
SELRRAGVFV KTVQDKPQAA DWALKRQMQH SMSRGIDWLF LVSDDSDFSE MLRRAREANL  300
GTVVVGDWDR ALGRHADVWV SWMGVENGEV SEEDLVPRNR RRSGIYDGDG NGLFSVKGLD  360
DDDDGDDGHL DSVLDELVVA RSQFNGMRIS VFSEGEEEEV DVDFMTEEID EDYLLEDSDD  420
EEMDEDENF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015884286.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015884286.2	0.0	uncharacterized protein LOC107419957
TrEMBL	A0A2P5CVL4	0.0	A0A2P5CVL4_PARAD; Zinc finger, C2H2 domain containing protein
STRING	XP_008357383.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6441	31	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-163	C2H2-like zinc finger protein