PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015884122.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Nin-like

Protein Properties

Length: 906aa MW: 100885 Da PI: 6.2413

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015884122.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.6	5.9e-29	591	642	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc T+LKriCRq+GIkRWP+Rkik++ XP_015884122.1 591 AEKTITLQVLRQYFAGSLKDAAKSIGVCSTTLKRICRQHGIKRWPSRKIKKV 642 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.768	581	662	IPR003035	RWP-RK domain
Pfam	PF02042	6.7E-25	594	642	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.7E-23	805	901	No hit	No description
SMART	SM00666	1.4E-27	814	898	IPR000270	PB1 domain
PROSITE profile	PS51745	26.947	814	898	IPR000270	PB1 domain
Pfam	PF00564	7.2E-20	816	897	IPR000270	PB1 domain
CDD	cd06407	1.53E-39	816	896	No hit	No description
Gene3D	G3DSA:3.10.20.240	9.9E-22	816	897	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 906 aa Download sequence Send to blast
MDDSVLSPAL VLGAPSDTAM DLDFMDELFL EGCWLETTDG SGFLNQSPPG SNALFDPLFV 60 WPSSETNSEL GTNPSKRSNQ DERHKASFNE PVERGPLATE SSPQTMIDVA GCSDGLEDQT 120 FQVCEPGRRW WIGPKASPGP ASSVVERLVG ALALIKDVIK DKNSLVQIWV PVHREGRHVL 180 TTNNLPCAVY PSCHKLARYR DISVNYEFSA EEDSEELVMG LPGRVFSRKV PEWTPDVRFF 240 RNEEYPRVSH AQQNDVCGTL ALPIFEKGSR NCLGVVEVVL TTQKIKYRSE LESVCEALEA 300 VDLRSSEILN RNVKVRNMYC QASLPEIQEV LRSACETHRL PLAQTWVPCI QQAKDGSRHS 360 DDNYTWCVST VDHACHVADL HFRAFHEACS EHHLLKGQGI VGEAFMTNKP CFSDDIASIS 420 KTKYPLSHHA RMFGLRSAVA IRLRSIHADV ADFVLELFLP VDCTDPEEQK KMLTSLSLII 480 QQFCRSLRVI TDEELEEESE FPVSEVTVPS NSRPGTTASL TEVRQGGTAI SLFPKEKPME 540 DSGEKLSKLG QLQKDSNNKT VEYAGDCYTI GEGSCSSLGV GKTSEKRRTK AEKTITLQVL 600 RQYFAGSLKD AAKSIGVCST TLKRICRQHG IKRWPSRKIK KVGHSLQKLQ LVIDSVQGAS 660 GAFQIDSFYT NFPELASPNL SGSDPFSTSK RDHPKPTNMQ PEGGMFSSQA TASKSSSSCS 720 QSSSSSQSCS SRSQQQPRMS NVAGNEDLMV GENFGDGMLK RVRSEAELHA STVDVSKPLQ 780 RSRSHKSLSD HHQKENVPTL PRDNSRGSQV VGDFQRVKVT YGDEKTRFRM HNSWGVKELV 840 QEISRRFDIE DMDQFDIKYL DDDSEWVLLT CDADLEECIE IYRSSSESNT IKLSLHVSRH 900 HLRGPS

Sequence ? help Back to Top

Protein Sequence Length: 906 aa Download sequence Send to blast

MDDSVLSPAL VLGAPSDTAM DLDFMDELFL EGCWLETTDG SGFLNQSPPG SNALFDPLFV  60
WPSSETNSEL GTNPSKRSNQ DERHKASFNE PVERGPLATE SSPQTMIDVA GCSDGLEDQT  120
FQVCEPGRRW WIGPKASPGP ASSVVERLVG ALALIKDVIK DKNSLVQIWV PVHREGRHVL  180
TTNNLPCAVY PSCHKLARYR DISVNYEFSA EEDSEELVMG LPGRVFSRKV PEWTPDVRFF  240
RNEEYPRVSH AQQNDVCGTL ALPIFEKGSR NCLGVVEVVL TTQKIKYRSE LESVCEALEA  300
VDLRSSEILN RNVKVRNMYC QASLPEIQEV LRSACETHRL PLAQTWVPCI QQAKDGSRHS  360
DDNYTWCVST VDHACHVADL HFRAFHEACS EHHLLKGQGI VGEAFMTNKP CFSDDIASIS  420
KTKYPLSHHA RMFGLRSAVA IRLRSIHADV ADFVLELFLP VDCTDPEEQK KMLTSLSLII  480
QQFCRSLRVI TDEELEEESE FPVSEVTVPS NSRPGTTASL TEVRQGGTAI SLFPKEKPME  540
DSGEKLSKLG QLQKDSNNKT VEYAGDCYTI GEGSCSSLGV GKTSEKRRTK AEKTITLQVL  600
RQYFAGSLKD AAKSIGVCST TLKRICRQHG IKRWPSRKIK KVGHSLQKLQ LVIDSVQGAS  660
GAFQIDSFYT NFPELASPNL SGSDPFSTSK RDHPKPTNMQ PEGGMFSSQA TASKSSSSCS  720
QSSSSSQSCS SRSQQQPRMS NVAGNEDLMV GENFGDGMLK RVRSEAELHA STVDVSKPLQ  780
RSRSHKSLSD HHQKENVPTL PRDNSRGSQV VGDFQRVKVT YGDEKTRFRM HNSWGVKELV  840
QEISRRFDIE DMDQFDIKYL DDDSEWVLLT CDADLEECIE IYRSSSESNT IKLSLHVSRH  900
HLRGPS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015884122.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015884122.1	0.0	protein NLP4-like
Refseq	XP_015884123.1	0.0	protein NLP4-like
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A221I0P5	0.0	A0A221I0P5_TREOI; NIN-like transcription factor
STRING	EMJ11696	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein