PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015883713.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ZF-HD
Protein Properties Length: 191aa    MW: 21022.3 Da    PI: 8.1448
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015883713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.41.7e-28759357
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                    + +Y+eCl+NhAaslG++a+DGCgEf+ +  ++++  +l+CaACgCHRnFHR+ +
  XP_015883713.1  7 NEVYRECLRNHAASLGSYATDGCGEFTLD--DTSSEGGLQCAACGCHRNFHRKVT 59
                    678*************************8..55789****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.5E-24959IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-181057IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-221057IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.8321058IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.1E-27106173IPR009057Homeodomain-like
SuperFamilySSF466892.91E-15107172IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-27115173IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEGESTNEVY RECLRNHAAS LGSYATDGCG EFTLDDTSSE GGLQCAACGC HRNFHRKVTY  60
AGGNHPSSTT TTTTTTTAIS QGRRRDHNQP SSMSGEMMMM STVVAESPES DRSGKKRIRT  120
KFTADQKEKM FAFAEKIGWK LQRKDLEDEI ESFCKSVGVS RQVFKVWMHN HKNLSSSSSA  180
NSIGNASSLT Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-211161781879ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015883713.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015883713.11e-142zinc-finger homeodomain protein 9-like
TrEMBLA0A2N9I0P18e-79A0A2N9I0P1_FAGSY; Uncharacterized protein
STRINGXP_004299496.14e-79(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-39homeobox protein 22