PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015883513.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 25400.7 Da PI: 6.0507 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.4 | 0.00029 | 36 | 85 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rr + erE++ R+++N+ f L l + ++ + Ka++L +A++++k+L XP_015883513.1 36 RRIHKAEREKQKREHLNELFLGLYNALELS----QQNNGKASVLCEATRFLKDL 85 788999*********************998....67889999999999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.5E-6 | 32 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-11 | 32 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.94E-5 | 33 | 90 | No hit | No description |
PROSITE profile | PS50888 | 11.071 | 35 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGSEDAVPLV ETVNMAVEES ADRASRGKKN QRKVSRRIHK AEREKQKREH LNELFLGLYN 60 ALELSQQNNG KASVLCEATR FLKDLLVQIE CLRKEHASLL SESQYVATEK NELRDENSTL 120 KNQIEKLQSE LEARIVQSKP DLNVPPPVEY KAPEFASHFV GDSLAMPAAE PALPQPSAVF 180 VVPLRPDLQA YPLPGATQPA SNPISQVSKP HARYPTSADS WPSQLLDE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015883513.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024929707.1 | 1e-166 | transcription factor bHLH47 | ||||
Swissprot | Q9SN74 | 5e-61 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | A0A2N9J553 | 4e-96 | A0A2N9J553_FAGSY; Uncharacterized protein | ||||
TrEMBL | W9QXK2 | 9e-96 | W9QXK2_9ROSA; Uncharacterized protein | ||||
STRING | XP_008239804.1 | 4e-98 | (Prunus mume) | ||||
STRING | XP_010092057.1 | 1e-96 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8223 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 2e-63 | bHLH family protein |