PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015883449.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 309aa    MW: 34856 Da    PI: 7.2673
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015883449.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+ +++q+G g+W++ +++ g+ R +k+c++rw +yl
   XP_015883449.1 14 RGPWTPEEDQKLLAYIQQHGRGSWSSLPQRAGLQRYGKSCRLRWINYL 61
                     89********************************************97 PP
2Myb_DNA-binding50.16.4e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eEd ++++++++lG++ W+ Ia +++ +Rt++++k +w+++l
   XP_015883449.1  67 RGKFSIEEDRKIIQLHALLGNR-WSIIATHLP-KRTDNEIKKYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.916961IPR017930Myb domain
SuperFamilySSF466891.05E-2911108IPR009057Homeodomain-like
SMARTSM007173.3E-121363IPR001005SANT/Myb domain
PfamPF002491.0E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-241568IPR009057Homeodomain-like
CDDcd001676.20E-101661No hitNo description
PROSITE profilePS5129427.68562116IPR017930Myb domain
SMARTSM007171.0E-1566114IPR001005SANT/Myb domain
PfamPF002495.4E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2569116IPR009057Homeodomain-like
CDDcd001672.75E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MARAPKSDGD GLKRGPWTPE EDQKLLAYIQ QHGRGSWSSL PQRAGLQRYG KSCRLRWINY  60
LRPNIKRGKF SIEEDRKIIQ LHALLGNRWS IIATHLPKRT DNEIKKYWNT HLKKRLAMLG  120
IDPVTHKPIT NTLSSANGDR KNVSILSHVA QWETIRLEAE ARLVRESAKL REGSSSGSAC  180
TNNNNTSALD GHEVVHHCLD ILKAWQIQIS NSIQGEDNCS SFLENTMGNS MNTNSLGFND  240
VVLLGSSGED LYEAVEEKRW NNIEDFNNIG EGNLIQGFTN ILSNNGFESD FNPVDINNNT  300
CFIFGESYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015883449.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015883449.10.0transcription factor MYB106-like
SwissprotQ9LE633e-89MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2P5F6Y64e-96A0A2P5F6Y6_TREOI; MYB transcription factor
STRINGEOY018545e-96(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.21e-89myb domain protein 16