PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015883292.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | SBP | ||||||||
Protein Properties | Length: 554aa MW: 60693 Da PI: 7.9108 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.6 | 6.5e-42 | 172 | 247 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rhkvCe hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q XP_015883292.1 172 CQVYGCNKDLSSSKDYHKRHKVCELHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDNGKRSCRKRLAGHNERRRKPQ 247 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.1E-33 | 166 | 233 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.257 | 169 | 246 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.76E-39 | 170 | 249 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.4E-32 | 172 | 245 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MESWTYVSEG KGFVSEETIS TFNSLARSKN AVLGWELKTP CTFGNNMLVP SQQDIENHGF 60 GEYIEMIGKP LPSDSIGGVL SSKVCVGKNV NHTMTNTFSG EEESSSKLSS SILDSNSKDS 120 SLIDLKLGRI TDHRDIHTSK FSKGAPVLSS LESSTPPKRM RISGLHSQTA FCQVYGCNKD 180 LSSSKDYHKR HKVCELHSKT AKVIVNGIEQ RFCQQCSRFH LLAEFDNGKR SCRKRLAGHN 240 ERRRKPQMGI HSGRAGRLLQ SYSGSRFQGT TLSTTSFICQ DILPGGFLHP DKYGTNDWCR 300 SIKVEDGHDY RPLSSLMVTN GHHRSKSLFP PYDIEKHFPP FNESGANAAT GSIFSENSSQ 360 YPHDLGCPNS GPRSFLHNNT LGNEDFNFFN TATNIQGFSL GISGSGCALS LLSSQSQNPS 420 SHSAEIPIAR PVVMPGNHTC YGMSQVSEKI IGACSQAPIS AVSNKLPSLG MNTVNGNNLS 480 PMLISNASDT VNFDITDGIF QGSDFVNSKD RLSCADGPTI DLLQLSSQLQ RVEDQRQSLQ 540 MKQENDAFCC LRIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-29 | 171 | 245 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015883292.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 1e-52 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 1e-52 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015883292.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A2P5EBT1 | 0.0 | A0A2P5EBT1_TREOI; SBP-box transcription factor | ||||
STRING | EMJ10299 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-49 | SBP family protein |