PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015883105.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TCP
Protein Properties Length: 400aa    MW: 44071.3 Da    PI: 8.9971
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015883105.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP93.54.4e-2955180389
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................ 65 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl + k  i++l+ +                                
  XP_015883105.1  55 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLNQPSKVIDWLLDATKDDIDKLPPLqipqgfgpqfhqqillpqetmppphlqpslas 149
                     79*************************************************************77777777776666666665555555444444 PP

             TCP  66 ..ssssaseceaesssssasnsssg........k 89 
                       +++s +++++++++++ s+   +        +
  XP_015883105.1 150 ffDANSTNFMKEAAEHQTLSS---SmktkywdiD 180
                     332222233322222222221...0222445553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.36356114IPR017887Transcription factor TCP subgroup
PfamPF036348.5E-2756135IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MITNSREKSL QAKLEGENIN QTTFFKASTS SSSSSSRQWG GFRNPRIVRV SRSFGGKDRH  60
SKVCTIRGLR DRRIRLSVPT AIQLYDLQDR LGLNQPSKVI DWLLDATKDD IDKLPPLQIP  120
QGFGPQFHQQ ILLPQETMPP PHLQPSLASF FDANSTNFMK EAAEHQTLSS SMKTKYWDID  180
AAVLKAKGKE LFERGNHNSV SDHQKSDSII RINEAENQDG IGSGTGFGGQ LFGQKFFPMS  240
SHPSLPGMLN NSMAYNYYHS EPSNLSLSHF GGHGFASQID SHAGNVSSLS LSSPLPLASG  300
PSQLFFCPPI PPPPPPLFSP YPTPYMTSTS SLVESDIPKQ INHTQLLSTS TSSSHHLLPN  360
SLMPSLHSSS WPSKSFHTIS NPKQLHSHNN DESQTPEKGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-1961115155Putative transcription factor PCF6
5zkt_B7e-1961115155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015883105.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015883105.10.0transcription factor TCP5
RefseqXP_024929171.10.0transcription factor TCP5
TrEMBLA0A438I3C81e-123A0A438I3C8_VITVI; Transcription factor TCP5
STRINGEOY220941e-114(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.16e-49TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5