PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015883027.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TCP
Protein Properties Length: 441aa    MW: 49845.5 Da    PI: 7.2734
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015883027.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.24.1e-401643293133
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasnss 86 
                      k+drhski T++g+RdRR+Rls+e+a++fF Lqd+LGfdk+skt+ WLl qak +ik+l++            +            +ss+  s+
  XP_015883027.1 164 CKRDRHSKINTARGPRDRRMRLSLEVARKFFGLQDMLGFDKASKTVAWLLIQAKSEIKKLARElkkqpsscsaaG-----------TKSSTTCST 247
                     69*************************************************************654444444442...........333333222 PP

             TCP  87 sg...................................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                     s+                                   k++ +++k++++ ++++++  la+esr karararertre    k
  XP_015883027.1 248 SEcevvsgtdevalidggdddddhhrrcgrksssssaKEMMKKKKKSRQLSRKNAFDPLARESRDKARARARERTREXXXXK 329
                     2223334444444555555566666677777776665556666677777778888899999***************987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.4E-43165325IPR005333Transcription factor, TCP
PROSITE profilePS5136933.095165223IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.029308325IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MMFPSNSCNG DDQAFFYRTF LTNNDTNNII PNSKQQQQQQ QDPLLPLPLP SPSSLSSFFY  60
LPSPFEEEEE EVVHHDLLLQ NQPDLVFQSH HELLASEKTV SNKSPTTTTS TMVEYSSSDV  120
AAAMKTTTTM NIQNHIMTGR EQNNVTELVQ QQQLQQQIPR KRSCKRDRHS KINTARGPRD  180
RRMRLSLEVA RKFFGLQDML GFDKASKTVA WLLIQAKSEI KKLARELKKQ PSSCSAAGTK  240
SSTTCSTSEC EVVSGTDEVA LIDGGDDDDD HHRRCGRKSS SSSAKEMMKK KKKSRQLSRK  300
NAFDPLARES RDKARARARE RTREXXXXKL RRLVGGDESK VCDHEATNNN QENPCRLGSS  360
WSPFEFETGE ESGTQSQNMN PTNSLAEDMV DDDSLVIMQG KWSPSSIFNS LQSTGISQEH  420
QFSDLQFFGK PWDICNTHNL C
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015883027.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024929126.10.0transcription factor TCP18
TrEMBLA0A2I4GYM91e-98A0A2I4GYM9_JUGRE; transcription factor TCP12-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.28e-25TCP family protein