PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882858.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 849aa    MW: 93376.5 Da    PI: 6.3679
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882858.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182381357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_015882858.1 23 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 81
                    6789*****************************************************97 PP
2START173.31.5e-541713782204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+r++g+v  +++  v+e+l+d++ W ++++ +++l vi ++  g+++l+
  XP_015882858.1 171 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARVCGLVSLEPT-KVAEILKDRPSWYRDCRCIDVLSVIPTAnaGTIELI 264
                     68999*****************************************************.8888888888******************9******* PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+    ss+vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l+
  XP_015882858.1 265 YMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppPSSFVRAEMLPSGFLIRPCEGGGSIIHIVDHIDLDAWSVPEVLRPLY 359
                     ***************************************99999888899********************************************* PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k++ a+l++ +
  XP_015882858.1 360 ESSKILAQKMTIAALRHIR 378
                     **************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-19681IPR009057Homeodomain-like
PROSITE profilePS5007115.6941882IPR001356Homeobox domain
SMARTSM003894.4E-152086IPR001356Homeobox domain
SuperFamilySSF466892.44E-162385IPR009057Homeodomain-like
PfamPF000464.4E-162381IPR001356Homeobox domain
CDDcd000863.00E-162383No hitNo description
CDDcd146862.39E-675114No hitNo description
PROSITE profilePS5084826.466161389IPR002913START domain
CDDcd088751.30E-70165381No hitNo description
Gene3DG3DSA:3.30.530.201.2E-22169375IPR023393START-like domain
SMARTSM002346.9E-51170380IPR002913START domain
PfamPF018523.7E-52171378IPR002913START domain
SuperFamilySSF559616.59E-38171382No hitNo description
PfamPF086705.0E-49704848IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MALVMHKDSS SNSNKQQQMD SSKYVRYTPE QVEALERVYS ECPKPSSLRR QQLIRECPIL  60
SNIEPKQIKV WFQNRRCREK QRKEASRLQT VNRKLSAMNK LLMEENDRLQ KQVSHLVYEN  120
GYMRQQLQAS GTTTDNSCES VVMNGQHQQQ QNPTPQQPQR DANNPAGLLA IAEETLAEFL  180
SKATGTAVDW VQMIGMKPGP DSIGIVAVSR NCSGVAARVC GLVSLEPTKV AEILKDRPSW  240
YRDCRCIDVL SVIPTANAGT IELIYMQTYA PTTLAAARDF WTLRYTTSLE DGSLVICERS  300
LTSSTGGPTG PPPSSFVRAE MLPSGFLIRP CEGGGSIIHI VDHIDLDAWS VPEVLRPLYE  360
SSKILAQKMT IAALRHIRQI AQETSGEIQC GGSRQPAVLR TFSQRLCRGF NDAVNGFADD  420
GWSLMGSDGV EDVTIVINSS PNKFLGSQHN TSIFPTFGGV LCAKASMLLQ NVPPALLVRF  480
LREHRSEWAD YGVDAYSAAC LKASPYAVPC ARPGGFPGSQ VILPLAHTVE HEEFMEVVRL  540
EGHTFSPEDV ALARDMYILQ LCSGIDENAV GACAQLVFAP IDESFADEAP LLPSGFRVIP  600
LDPKSDGPAA TRTLDLASTL EVGPGSTRPT SEANTNSDNL RSVLTIAFQF TFENHLRDNV  660
AAMARQYVRS VVGSVQRVAM AIAPSRLSSQ MGSKLLPHSP EALTLAQWIC RSYRIYTGGE  720
LVHVDSQSGD AVLKQLWNHS DAIMCCSVKT NASPLFTFAN QAGLDMLETT LVALQDIMLD  780
KILDEAGRKI LCSEFSKIMQ QGFAYLPPGI CISSMGRPVS YERAVAWKVL NDDDSHHCLA  840
FVFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882858.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882797.10.0homeobox-leucine zipper protein ATHB-14-like isoform X1
RefseqXP_015882858.10.0homeobox-leucine zipper protein ATHB-14-like isoform X1
RefseqXP_015882921.10.0homeobox-leucine zipper protein ATHB-14-like isoform X1
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2N9J8X20.0A0A2N9J8X2_FAGSY; Uncharacterized protein
STRINGEOY254960.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]