PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882638.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 465aa    MW: 51878.8 Da    PI: 5.3122
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882638.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS163.61.7e-50462532204
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkf 93 
                     ++lLl+cA+a++s+d +laq++++ l++ as+ gd++qRl++ f++AL +r +r +++ ++  ++s++s ++ +++l++++    ++++ P+++f
  XP_015882638.1  46 EKLLLHCARALESNDVTLAQQVMWVLNNVASSVGDTNQRLTSWFLRALISRASRVCPTAMSFNASSSSS-STIQRRLMSVTElagYVDLIPWHRF 139
                     589***************************************************888888655555555.565555555444499********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakr 185
                     ++ + N+aI +a++g ++vHi+Df+i++++QWp+L++aLa+Rpegpp lRiT+     ++    + + ee+g rL +f +  +vpfefnv + ++
  XP_015882638.1 140 GYCASNSAIFNAIQGYQKVHILDFSITHCMQWPTLIDALAKRPEGPPFLRITVPCFRPPVpplLNVSSEEVGLRLLNFSKFREVPFEFNV-IDDN 233
                     ****************************************************955544445699999**********************9.5777 PP

            GRAS 186 ledleleeLrvkp.gEalaV 204
                     l++ +  + + ++  E++ V
  XP_015882638.1 234 LSSSSSTTTSSSSsSETMCV 253
                     77665554444334666666 PP
2GRAS145.55.1e-45257452175373
            GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                     +f+f++l    l++l++++L+v+ +Eal++n++  l +l+des   ++   rd++L+ +k l+P++v vv++++++ns+s+  r++ +++y +  
  XP_015882638.1 257 NFHFELL----LSQLNPSSLNVRDDEALVINCQNWLRYLPDESIGNAKysLRDAFLNKIKALNPRIVLVVDEDSELNSSSLTSRITTCFNYLWIP 347
                     6889987....999*****************************99988779******************************************** PP

            GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                     fd+le+ lp++s +ri +E   +g +i+n++  eg++r+er e+  + ++r+++aGF ++p++e++++++k ll +++ ++g++  ee++ lvl+
  XP_015882638.1 348 FDALETFLPKDSGQRIEYESD-IGHKIENIIGFEGFQRIERLESGFTFSQRMRNAGFMSIPFGEETVAEVKGLLDEHAsGWGMKR-EEDHMLVLT 440
                     *********************.********************************************************5555543.6678999** PP

            GRAS 362 WkdrpLvsvSaW 373
                     Wk+++ v+++aW
  XP_015882638.1 441 WKGHNSVFATAW 452
                     ************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.88119433IPR005202Transcription factor GRAS
PfamPF035145.9E-4846253IPR005202Transcription factor GRAS
PfamPF035141.8E-42257452IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MKTEIRRSTT SLSLQNSTTT LFNTPQGPLE GALRGCLGSL DGACTEKLLL HCARALESND  60
VTLAQQVMWV LNNVASSVGD TNQRLTSWFL RALISRASRV CPTAMSFNAS SSSSSTIQRR  120
LMSVTELAGY VDLIPWHRFG YCASNSAIFN AIQGYQKVHI LDFSITHCMQ WPTLIDALAK  180
RPEGPPFLRI TVPCFRPPVP PLLNVSSEEV GLRLLNFSKF REVPFEFNVI DDNLSSSSST  240
TTSSSSSSET MCVESSNFHF ELLLSQLNPS SLNVRDDEAL VINCQNWLRY LPDESIGNAK  300
YSLRDAFLNK IKALNPRIVL VVDEDSELNS SSLTSRITTC FNYLWIPFDA LETFLPKDSG  360
QRIEYESDIG HKIENIIGFE GFQRIERLES GFTFSQRMRN AGFMSIPFGE ETVAEVKGLL  420
DEHASGWGMK REEDHMLVLT WKGHNSVFAT AWVPNGVLED QIGVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-58114544420Protein SHORT-ROOT
5b3h_E1e-58114544420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882638.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882638.10.0scarecrow-like protein 32
TrEMBLA0A2P5EAV00.0A0A2P5EAV0_TREOI; GRAS transcription factor
STRINGEOX992080.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-125GRAS family protein