PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015882568.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | TALE | ||||||||
Protein Properties | Length: 329aa MW: 37002.5 Da PI: 4.6716 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.3 | 6e-09 | 272 | 306 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp+++++ LA+ +gL+++q+ +WF N+R ++ XP_015882568.1 272 KWPYPTEADKIALAQLTGLDQKQINNWFINQRKRH 306 569*****************************885 PP | |||||||
2 | ELK | 38.6 | 2.3e-13 | 226 | 247 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+ L+rKYsgy+++Lk+EF+ XP_015882568.1 226 ELKDKLMRKYSGYISTLKHEFC 247 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.3E-22 | 85 | 129 | IPR005540 | KNOX1 |
Pfam | PF03790 | 9.3E-22 | 87 | 128 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.2E-23 | 135 | 186 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.2E-23 | 139 | 185 | IPR005541 | KNOX2 |
Pfam | PF03789 | 3.2E-11 | 226 | 247 | IPR005539 | ELK domain |
SMART | SM01188 | 1.3E-7 | 226 | 247 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.79 | 226 | 246 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.098 | 246 | 309 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-20 | 248 | 323 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.2E-13 | 248 | 313 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-28 | 251 | 310 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.51E-13 | 258 | 310 | No hit | No description |
Pfam | PF05920 | 1.5E-16 | 266 | 305 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 284 | 307 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MMDNPYGIDT TAGVSDQSSM EVPGSFVAPA DYLSFEGIGD RVPSFGSDPI FSGSSSTAAV 60 SDEASMVVAA EIQRGTSSVD DEVSRVIREK IASHPLYPKL LQAYIDCQKV GAPPEIACLL 120 DEIRRENEVC KRTAVSTSVV TDPELDDFME TYCEILVKYK SDLARPFDEA TNFLNKIQTQ 180 LNTLCTTSSA SRSYVSDETG GSSEEDLSGG EIDIQDNCQR SNEDRELKDK LMRKYSGYIS 240 TLKHEFCKKK KKGKLPKEAR QTLLDWWNIH YKWPYPTEAD KIALAQLTGL DQKQINNWFI 300 NQRKRHWKPS ENMQFAIMDS IYGPFCMND |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015882568.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024929478.1 | 0.0 | homeobox protein knotted-1-like 6 | ||||
Swissprot | Q84JS6 | 1e-122 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | D7SHP3 | 1e-149 | D7SHP3_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0000g08710.t01 | 1e-150 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 1e-111 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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