PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882438.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YA
Protein Properties Length: 208aa    MW: 22869.2 Da    PI: 8.4266
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882438.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.8e-32113169158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQy++Il+RRq+Rak+e+e+k+  ksrkpylheSRh hAlrR+Rg+gGrF
  XP_015882438.1 113 EEPVFVNAKQYRGILRRRQSRAKAESENKV-VKSRKPYLHESRHLHALRRARGCGGRF 169
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.6E-36111172IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.972112172IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.4E-27114169IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.3E-22115137IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860117137IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.3E-22146169IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MPSSVHDLSD NSEADEQRKH SEPQIQSSSP AAGMSNPGIT TPNVQYATPS HLGAGHAVAP  60
AAYPYPDPYY RSIFAPYDAQ PYPPQPYGGQ PMVHLQLMGI QQAGVPLPSD AVEEPVFVNA  120
KQYRGILRRR QSRAKAESEN KVVKSRKPYL HESRHLHALR RARGCGGRFL NSKKDENQEN  180
EVASGDNSQQ HINLNSDKNE RASSDGTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-20112177166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882438.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882438.11e-153nuclear transcription factor Y subunit A-7-like isoform X1
SwissprotQ84JP18e-73NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A067GIX81e-126A0A067GIX8_CITSI; Uncharacterized protein
TrEMBLA0A2I4GVD21e-126A0A2I4GVD2_JUGRE; nuclear transcription factor Y subunit A-7
STRINGXP_006468304.11e-126(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-56nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]