PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015882360.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C3H

Protein Properties

Length: 501aa MW: 55080.2 Da PI: 4.7055

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015882360.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41	3.2e-13	157	179	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f+++tGtCk+G++CkF+H+ XP_015882360.1 157 EDCSFYLKTGTCKFGSNCKFNHP 179 89********************9 PP
2	zf-CCCH	26.7	9.6e-09	203	226	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 ++ +C++++r+G Ck+G C+++H XP_015882360.1 203 GQTECKYYLRSGGCKFGKACRYNH 226 6789******************** PP
3	zf-CCCH	42.1	1.4e-13	249	273	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG CkyG++C+F+H+ XP_015882360.1 249 GERECPYYMRTGSCKYGANCRFNHP 273 5799********************9 PP
4	zf-CCCH	24.2	6e-08	387	413	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f +tG Ck+ ++Ck++H++ XP_015882360.1 387 PGQPECSYFIKTGDCKFKSNCKYHHPK 413 5789*********************96 PP
5	zf-CCCH	35.5	1.7e-11	435	458	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++r+G+Ck+G+ CkF H+ XP_015882360.1 435 QNICTYYSRYGICKFGPACKFDHS 458 679********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.319	153	181	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.27E-6	153	181	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.8E-7	153	180	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-10	157	179	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-5	159	178	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.117	201	229	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.4E-4	201	228	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-6	203	226	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-5	204	229	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.788	247	275	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-6	247	274	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.3E-11	249	273	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.5E-6	249	274	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.5E-6	253	272	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.864	386	414	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0035	386	413	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-4	388	413	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.66E-5	390	415	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.19E-6	430	458	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.0E-5	432	459	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.333	432	460	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.0E-9	435	458	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-4	437	460	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MEPSEASSVP TNPTNDSQND DASSALQPSL PSSNGDPDLD PAPTDLDQAA QGVREIEEQF 60 GEMGLKENKE ENEEVVESGL KEKEEEDGAE GDSDGGERER KEENGKSEEE EESDGGENEN 120 ENGSEVEVEG NGDELEKNNE GGGSNRRNQY PVRPEAEDCS FYLKTGTCKF GSNCKFNHPV 180 RRKNNQVAKE KVKEQEELPE RPGQTECKYY LRSGGCKFGK ACRYNHTKGK TAAASVLELN 240 FVGLPIRMGE RECPYYMRTG SCKYGANCRF NHPDPTASGG FDPSSGYGNG EPVSLPGAPQ 300 SPIASWSSPR SLNETAPFVP MMLSPTQGVP PQNSEWNGYQ APVYLPPERT LPPPPPPPYV 360 MNSPVAESNI YTHHQPLKQI EEFPERPGQP ECSYFIKTGD CKFKSNCKYH HPKNRTTMSN 420 QIALSDKGLP LRPDQNICTY YSRYGICKFG PACKFDHSVH PPPSNISGLG HQHPYGDSAT 480 MERAGTAGSR NRSDSTIQQP V

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MEPSEASSVP TNPTNDSQND DASSALQPSL PSSNGDPDLD PAPTDLDQAA QGVREIEEQF  60
GEMGLKENKE ENEEVVESGL KEKEEEDGAE GDSDGGERER KEENGKSEEE EESDGGENEN  120
ENGSEVEVEG NGDELEKNNE GGGSNRRNQY PVRPEAEDCS FYLKTGTCKF GSNCKFNHPV  180
RRKNNQVAKE KVKEQEELPE RPGQTECKYY LRSGGCKFGK ACRYNHTKGK TAAASVLELN  240
FVGLPIRMGE RECPYYMRTG SCKYGANCRF NHPDPTASGG FDPSSGYGNG EPVSLPGAPQ  300
SPIASWSSPR SLNETAPFVP MMLSPTQGVP PQNSEWNGYQ APVYLPPERT LPPPPPPPYV  360
MNSPVAESNI YTHHQPLKQI EEFPERPGQP ECSYFIKTGD CKFKSNCKYH HPKNRTTMSN  420
QIALSDKGLP LRPDQNICTY YSRYGICKFG PACKFDHSVH PPPSNISGLG HQHPYGDSAT  480
MERAGTAGSR NRSDSTIQQP V

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015882360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882360.1	0.0	zinc finger CCCH domain-containing protein 43
Swissprot	Q9STM4	1e-136	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A2P5BA34	0.0	A0A2P5BA34_PARAD; Zinc finger, CCCH-type
STRING	XP_008239614.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4156	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-125	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]