PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882190.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SBP
Protein Properties Length: 394aa    MW: 42994.9 Da    PI: 7.5651
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882190.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.24.3e-4293169278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC+adls++++yhrrhkvCe hsk+p+v++ g +qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  XP_015882190.1  93 CLVDGCKADLSTCRDYHRRHKVCELHSKTPQVTIGGNTQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 169
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.5E-3586154IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.81290167IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.15E-3891172IPR004333Transcription factor, SBP-box
PfamPF031104.0E-3193166IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDWNLKAPSW DFTDLEQETF PTLDSVDGSS SCGEHRTIKG EFSVDLKLGR VGNPGNELLD  60
MWKEPGLPKT TSSPSGSSKR ARGAYNGSQV VSCLVDGCKA DLSTCRDYHR RHKVCELHSK  120
TPQVTIGGNT QRFCQQCSRF HSLEEFDEGK RSCRKRLDGH NRRRRKPQPE PLSRTGALLS  180
SYQGTQLLPF STSLVYSSTP LVNHSWAGVV KTEADHAGLH NQHTNLPLLD KQNLFLGSSS  240
SSSSSSYKGR KQLGVLLGND LPTLNNQTSL EVSVCQPLLR SISLSESGGG SRSKMFCDRL  300
TTQIHDSDCA LSLLSSPQTQ TSEIGLRHIV QPNSISLVHP VGPPSLHGNS LEPIDSVFVS  360
NGSDASVHCP GMFHMGSDGS QGNEAPQTLP FHWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-28931661184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149166KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882190.10.0squamosa promoter-binding-like protein 13A
RefseqXP_015882191.10.0squamosa promoter-binding-like protein 13A
RefseqXP_024929790.10.0squamosa promoter-binding-like protein 13A
RefseqXP_024929791.10.0squamosa promoter-binding-like protein 13A
TrEMBLM5WUE70.0M5WUE7_PRUPE; Uncharacterized protein
STRINGXP_008239496.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-72SBP family protein