PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882051.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YC
Protein Properties Length: 273aa    MW: 30753.8 Da    PI: 6.3028
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882051.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.27.8e-56851891102
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdfl
  XP_015882051.1  85 QLQMFWANQmqeIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL 179
                     89******988889********************************************************************************* PP

           NF-YC  93 vdivprdelk 102
                     vdi+prdelk
  XP_015882051.1 180 VDIIPRDELK 189
                     *******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.04E-3463179IPR009072Histone-fold
Gene3DG3DSA:1.10.20.109.9E-3898171IPR009072Histone-fold
PfamPF008082.4E-21107170IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDQSGQAQQQ HQQPQPPVVG VVTGAQMTYA PPSYQTAPMV ASGTPAVAVP SPTQPPTTFS  60
NSPHQLAYQQ AQHFHHQQQQ QQQQQLQMFW ANQMQEIEQT SDFKNHSLPL ARIKKIMKAD  120
EDVRMISAEA PVIFAKACEM FILELTLRSW IHTEENKRRT LQKNDIAAAI SRTDVFDFLV  180
DIIPRDELKE EGLGVTKATI PVVGSPADIP YYYVPPQHPV GPTGMIMGKP VDQAAMYAAQ  240
QPRPPMAFVP WPQTQPQQQQ QQQQQQQQQQ TEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B8e-5993185395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163RRTLQKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882051.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882049.10.0nuclear transcription factor Y subunit C-2
RefseqXP_015882050.10.0nuclear transcription factor Y subunit C-2
RefseqXP_015882052.10.0nuclear transcription factor Y subunit C-2
RefseqXP_015882054.10.0nuclear transcription factor Y subunit C-2
RefseqXP_024929310.10.0nuclear transcription factor Y subunit C-2
RefseqXP_024929311.10.0nuclear transcription factor Y subunit C-2
TrEMBLA0A2P5CB241e-145A0A2P5CB24_TREOI; Nuclear transcription factor Y subunit C
TrEMBLM5WH061e-144M5WH06_PRUPE; Uncharacterized protein
STRINGEMJ129841e-145(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-82nuclear factor Y, subunit C2