PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881942.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 467aa    MW: 52709.6 Da    PI: 5.9319
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881942.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS457.77e-140474621374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+ v+ g+ e+a+  L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ s  ++see+ + +lf+e++P+lk+s+
  XP_015881942.1  47 LIHLLIACANQVALGSIENANIGLEHISHLASPDGDTMQRIAAYFTEALADRMLKGWPGLHKALNSTKIS--SVSEEILVKRLFFELCPFLKLSY 139
                     689*************************************************************999998..6********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     l++NqaI ea+ege++vHiiD++ s+++QW++Llq+L++Rpegpp+lRiTg+++    +ke le+++ rL++ Ae+l++pf+fn+ v+++le+l+
  XP_015881942.1 140 LITNQAIIEAMEGEKMVHIIDLNSSEPAQWINLLQTLSARPEGPPHLRITGIHE----QKEVLEQMALRLTEEAEKLDIPFQFNP-VVSKLENLD 229
                     ******************************************************....9**************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll.................................................desvsleserdevLklvkslsP 236
                     +e+Lrvk+gEalaV++vlqlh ll                                                   svs + +  ++L  +++lsP
  XP_015881942.1 230 IESLRVKTGEALAVSSVLQLHCLLatdeenqrsppstsknlqkvfhlnqrtlgewlekdssyacnlspdsalsPLSVSASPRMGSFLTGIWGLSP 324
                     ********************************************************************99987555555557889********** PP

            GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                     k++vv+eqe++hn+ +++er+leal++y+alfd+le++++r+s er k+E++l+g+ei+n++aceg+er+erhe+lekW  rle aGF+ vpls+
  XP_015881942.1 325 KLMVVTEQESNHNGLTLMERVLEALNFYAALFDCLESTVSRASMERLKLEKMLFGEEIKNIIACEGTERKERHEKLEKWILRLELAGFGRVPLSY 419
                     *********************************************************************************************** PP

            GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +   qa +ll+ ++ dgy++++e+g+lv++W+drpL+s+SaWr
  XP_015881942.1 420 HGRLQATRLLHSYAYDGYKIKDENGCLVICWQDRPLFSISAWR 462
                     ******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.13921442IPR005202Transcription factor GRAS
PfamPF035142.4E-13747462IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MVQEEGSSSV TSSPLQFFPW MPVSPGVGGS PYPWLRELKS EERGLYLIHL LIACANQVAL  60
GSIENANIGL EHISHLASPD GDTMQRIAAY FTEALADRML KGWPGLHKAL NSTKISSVSE  120
EILVKRLFFE LCPFLKLSYL ITNQAIIEAM EGEKMVHIID LNSSEPAQWI NLLQTLSARP  180
EGPPHLRITG IHEQKEVLEQ MALRLTEEAE KLDIPFQFNP VVSKLENLDI ESLRVKTGEA  240
LAVSSVLQLH CLLATDEENQ RSPPSTSKNL QKVFHLNQRT LGEWLEKDSS YACNLSPDSA  300
LSPLSVSASP RMGSFLTGIW GLSPKLMVVT EQESNHNGLT LMERVLEALN FYAALFDCLE  360
STVSRASMER LKLEKMLFGE EIKNIIACEG TERKERHEKL EKWILRLELA GFGRVPLSYH  420
GRLQATRLLH SYAYDGYKIK DENGCLVICW QDRPLFSISA WRFRRYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-63314642380Protein SCARECROW
5b3h_D5e-63314642380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881942.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881941.10.0scarecrow-like protein 3
RefseqXP_015881942.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLB9GM400.0B9GM40_POPTR; Uncharacterized protein
STRINGPOPTR_0001s06090.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]