PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015881903.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GRAS | ||||||||
Protein Properties | Length: 356aa MW: 39592.4 Da PI: 5.1288 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 292.2 | 1.4e-89 | 47 | 349 | 1 | 261 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+ v+ g+ e+a+ L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ s ++see+ + +lf+e++P+lk+s+ XP_015881903.1 47 LIHLLIACANQVALGSIENANIGLEHISHLASPDGDTMQRIAAYFTEALADRMLKGWPGLHKALNSTKIS--SVSEEILVKRLFFELCPFLKLSY 139 689*************************************************************999998..6********************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 l++NqaI ea+ege++vHiiD++ s+++QW++Llq+L++Rpegpp+lRiTg+++ +ke le+++ rL++ Ae+l++pf+fn+ v+++le+l+ XP_015881903.1 140 LITNQAIIEAMEGEKMVHIIDLNSSEPAQWINLLQTLSARPEGPPHLRITGIHE----QKEVLEQMALRLTEEAEKLDIPFQFNP-VVSKLENLD 229 ******************************************************....9**************************.799****** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrll.................................................desvsleserdevLklvkslsP 236 +e+Lrvk+gEalaV++vlqlh ll svs + + ++L +++lsP XP_015881903.1 230 IESLRVKTGEALAVSSVLQLHCLLatdeenqrsppstsknlqkvfhlnqrtlgewlekdssyacnlspdsalsPLSVSASPRMGSFLTGIWGLSP 324 ********************************************************************99987555555557889********** PP GRAS 237 kvvvvveqeadhnsesFlerfleal 261 k++vv+eqe++hn+ +++er+l+ l XP_015881903.1 325 KLMVVTEQESNHNGLTLMERVLDML 349 *********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.056 | 21 | 356 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.8E-87 | 47 | 349 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MVQEEGSSSV TSSPLQFFPW MPVSPGVGGS PYPWLRELKS EERGLYLIHL LIACANQVAL 60 GSIENANIGL EHISHLASPD GDTMQRIAAY FTEALADRML KGWPGLHKAL NSTKISSVSE 120 EILVKRLFFE LCPFLKLSYL ITNQAIIEAM EGEKMVHIID LNSSEPAQWI NLLQTLSARP 180 EGPPHLRITG IHEQKEVLEQ MALRLTEEAE KLDIPFQFNP VVSKLENLDI ESLRVKTGEA 240 LAVSSVLQLH CLLATDEENQ RSPPSTSKNL QKVFHLNQRT LGEWLEKDSS YACNLSPDSA 300 LSPLSVSASP RMGSFLTGIW GLSPKLMVVT EQESNHNGLT LMERVLDMLT KTNLER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-42 | 30 | 243 | 1 | 216 | Protein SCARECROW |
5b3h_D | 4e-42 | 30 | 243 | 1 | 216 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015881903.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015881941.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_015881942.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 1e-148 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A2K2BR77 | 0.0 | A0A2K2BR77_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s06090.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2383 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-145 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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