PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015881784.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 362aa MW: 40404.9 Da PI: 7.9702 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.9 | 1.5e-07 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+rC F+H+ XP_015881784.1 3 KRVLCKFFAH-GACLKGERCEFSHD 26 99****6666.*************5 PP | |||||||
2 | zf-CCCH | 22.7 | 1.8e-07 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C yG+rC++ H+ XP_015881784.1 34 VCTFYLK-GVCAYGSRCRYEHV 54 6******.***********997 PP | |||||||
3 | zf-CCCH | 19.8 | 1.4e-06 | 143 | 165 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C+ +Hg XP_015881784.1 143 RPICS-FAAAGNCPRGENCPHIHG 165 79999.*************99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.1E-6 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.981 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-4 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.009 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.6E-4 | 31 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 31 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-5 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.404 | 140 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-4 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 5.3E-14 | 198 | 273 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 4.1E-10 | 202 | 268 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 8.31E-4 | 208 | 268 | No hit | No description |
Pfam | PF00097 | 3.1E-7 | 209 | 266 | IPR018957 | Zinc finger, C3HC4 RING-type |
SMART | SM00184 | 2.2E-7 | 209 | 266 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 12.371 | 209 | 267 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 233 | 242 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 13.582 | 296 | 325 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.13 | 296 | 324 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MSKRVLCKFF AHGACLKGER CEFSHDWKDP SNNVCTFYLK GVCAYGSRCR YEHVKPLRSE 60 SPGSSSSTSS RQSLVSDSSP LGHHSQNLSG GVFLTPGVLT ELSALSRPFF PSKEPAWKVE 120 SEQLDFVDAG NIGGPRTSGP ADRPICSFAA AGNCPRGENC PHIHGNICPI CGKQCLHPFR 180 PEEREEHLKT CEKKQKNLEA LKHSQEIECS VCLERVLSKP TAAERKFGLL SECDHPFCIS 240 CIRNWRSSSP TSGMDVNSAL RACPICRKLS YFVIPSVIWY STKEEKQEII DNYKAKLRSI 300 DCKHFDFGNG NCPFGTSCFY KHAYRDGRLE EVVLRHLGNE DGQAVIAKHI RLSDFLGDLH 360 IE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015881784.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015881784.1 | 0.0 | putative RING-type E3 ubiquitin transferase C3H69 isoform X2 | ||||
Refseq | XP_015881785.1 | 0.0 | putative RING-type E3 ubiquitin transferase C3H69 isoform X2 | ||||
Swissprot | E0X9N4 | 1e-177 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A2K2C4A4 | 0.0 | A0A2K2C4A4_POPTR; C3H family protein | ||||
STRING | POPTR_0009s06730.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-162 | C3H family protein |
Publications ? help Back to Top | |||
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