PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881750.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 360aa    MW: 40527.2 Da    PI: 7.5399
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881750.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.5e-07199218120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C+k+F+r  nL+ H+
  XP_015881750.1 199 FSCPVCSKTFNRYNNLQMHM 218
                     89*****************9 PP
2zf-C2H212.40.00049283305123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C k+F  k + ++H +++
  XP_015881750.1 283 FVCRKCAKTFAVKGDWRTHEKNC 305
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.762199226IPR007087Zinc finger, C2H2
SMARTSM003550.031199221IPR015880Zinc finger, C2H2-like
PfamPF139128.4E-5199218IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-6199218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.26E-7199221No hitNo description
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.3E-5270303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.26E-7278303No hitNo description
SMARTSM0035565283303IPR015880Zinc finger, C2H2-like
SMARTSM0035599309332IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MTDPYSNNVF NGWINFTHLH PHYYYSNPSL NFNQLPHQYA FPNKVININK SSIQTQRPFK  60
HVPPSSSPPL KALPLIDNLI RGSEGQDQEY ECSYSSSSAM EEEEDHIRNN NKDDINVGDG  120
NDGDKAYRNN VTVALNIGLP SPNSDDAGSS KMICSSSVDQ DVTDKDGANV VSSHPFERLN  180
KGQYWIPTPS QILIGPTQFS CPVCSKTFNR YNNLQMHMWG HGSQYRKGPD SLKGSQPTAM  240
LRLPCYCCSP GCKHNIDHPT SRPLKDFRTL QTHYKRKHGI KPFVCRKCAK TFAVKGDWRT  300
HEKNCGKIWY CICGSDFKHK RSLKDHMKAF GHGHGGFGID CPEDEDEPAS EIELDGEASI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881750.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-118ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0B2QDT41e-154A0A0B2QDT4_GLYSO; Protein TRANSPARENT TESTA 1
TrEMBLK7LWM61e-154K7LWM6_SOYBN; Uncharacterized protein
STRINGGLYMA12G36660.21e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-120C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]