PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015881700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 728aa MW: 79135.5 Da PI: 6.2379 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.7e-08 | 305 | 325 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_015881700.1 305 PCPDFRK-GACRRGDLCEYAHG 325 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00204 | 2.50E-14 | 32 | 160 | No hit | No description |
SuperFamily | SSF48403 | 4.82E-19 | 33 | 188 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 790 | 35 | 65 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:1.25.40.20 | 1.6E-18 | 43 | 164 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.1E-9 | 44 | 149 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.012 | 82 | 112 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 18.192 | 82 | 185 | IPR020683 | Ankyrin repeat-containing domain |
PRINTS | PR01415 | 4.3E-5 | 83 | 98 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2.0E-4 | 117 | 149 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.262 | 117 | 152 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 4.3E-5 | 136 | 150 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.2E-5 | 300 | 326 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-5 | 305 | 325 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.169 | 305 | 327 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.0E-4 | 305 | 327 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 333 | 363 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 37 | 335 | 358 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 728 aa Download sequence Send to blast |
MCGGPERSKT TTTSSTVETV SNTKDMSSLA VKTEDSFSSI LELASNNDAE GFKRLIDQNS 60 SSINEIGLWY SRPKGSKHIV PEHRTPLMVA ATYGNMDVLK LILSCPEADV NFSCGLDKST 120 ALHCAASGGS VNAVDVVKLL LSAGADQNFM DANGDRPVDV IVVHPKLLNM RTILEELLSN 180 DASDGYVGEH STHMSINSSN SDSSNLSSSP DNDFQSPELS SSPVASNITG LPVISTSEKK 240 EYPFDPSLPD IKNSIYATDE FRMFSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH 300 YSCVPCPDFR KGACRRGDLC EYAHGVFECW LHPAQYRTRL CKDGTSCNRR VCFFAHTTEE 360 LRPLYVSTGS AVPSPRAAAS GPNVMDMAAA LSLLPGSPSS ASAMSPSPFT QPMSPSVNGM 420 SNSSVAWPQP NVPTLHLPGS SLQSSRLRTS LSARDIPPED LNMLLDLDAQ HQLLNDMNSF 480 AQSRQSSASV SRSGRTKTLT PSNLEELFSA EVSLSPRYSD PAGASVFSPR QKSAVLNQFQ 540 QQQSMLSPIN TTVMSPKSVD HHLLQASFGV QSPGRMSPRS VEPISPMSSR LSAFAQRERQ 600 QQQLRSLSSR DLGSNIPSSV VGSPVKSWSK WGSPNGKLDW SVNGEDMNHS RKSSPCELEN 660 NGEEPDLSWV QSLVKESPPE MMKDKLAFPV SGGAASGEVP NSNSQIESVD HSVFGAWIEQ 720 MQLDQLVV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015881700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015881700.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A2P5E711 | 0.0 | A0A2P5E711_TREOI; Transmembrane protein | ||||
STRING | XP_010088235.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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