PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 728aa    MW: 79135.5 Da    PI: 6.2379
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.7e-08305325526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  XP_015881700.1 305 PCPDFRK-GACRRGDLCEYAHG 325
                     8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002042.50E-1432160No hitNo description
SuperFamilySSF484034.82E-1933188IPR020683Ankyrin repeat-containing domain
SMARTSM002487903565IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.6E-1843164IPR020683Ankyrin repeat-containing domain
PfamPF127961.1E-944149IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01282112IPR002110Ankyrin repeat
PROSITE profilePS5029718.19282185IPR020683Ankyrin repeat-containing domain
PRINTSPR014154.3E-58398IPR002110Ankyrin repeat
SMARTSM002482.0E-4117149IPR002110Ankyrin repeat
PROSITE profilePS5008812.262117152IPR002110Ankyrin repeat
PRINTSPR014154.3E-5136150IPR002110Ankyrin repeat
SMARTSM003561.2E-5300326IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5305325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169305327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-4305327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4333363IPR000571Zinc finger, CCCH-type
SMARTSM0035637335358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MCGGPERSKT TTTSSTVETV SNTKDMSSLA VKTEDSFSSI LELASNNDAE GFKRLIDQNS  60
SSINEIGLWY SRPKGSKHIV PEHRTPLMVA ATYGNMDVLK LILSCPEADV NFSCGLDKST  120
ALHCAASGGS VNAVDVVKLL LSAGADQNFM DANGDRPVDV IVVHPKLLNM RTILEELLSN  180
DASDGYVGEH STHMSINSSN SDSSNLSSSP DNDFQSPELS SSPVASNITG LPVISTSEKK  240
EYPFDPSLPD IKNSIYATDE FRMFSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH  300
YSCVPCPDFR KGACRRGDLC EYAHGVFECW LHPAQYRTRL CKDGTSCNRR VCFFAHTTEE  360
LRPLYVSTGS AVPSPRAAAS GPNVMDMAAA LSLLPGSPSS ASAMSPSPFT QPMSPSVNGM  420
SNSSVAWPQP NVPTLHLPGS SLQSSRLRTS LSARDIPPED LNMLLDLDAQ HQLLNDMNSF  480
AQSRQSSASV SRSGRTKTLT PSNLEELFSA EVSLSPRYSD PAGASVFSPR QKSAVLNQFQ  540
QQQSMLSPIN TTVMSPKSVD HHLLQASFGV QSPGRMSPRS VEPISPMSSR LSAFAQRERQ  600
QQQLRSLSSR DLGSNIPSSV VGSPVKSWSK WGSPNGKLDW SVNGEDMNHS RKSSPCELEN  660
NGEEPDLSWV QSLVKESPPE MMKDKLAFPV SGGAASGEVP NSNSQIESVD HSVFGAWIEQ  720
MQLDQLVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881700.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2P5E7110.0A0A2P5E711_TREOI; Transmembrane protein
STRINGXP_010088235.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]