PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881443.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 222aa    MW: 24139.8 Da    PI: 7.8601
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881443.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000314668123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C + F ++  L  H++ H
  XP_015881443.1 46 YECQYCFREFANSQALGGHQNAH 68
                    99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.4E-44272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.86E-64373No hitNo description
PROSITE profilePS5015711.5724673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MADIDCHAKP IKLFGFNISE DNDLNTTRSS SSPSESQDSD HHQRKYECQY CFREFANSQA  60
LGGHQNAHKK ERQLLKRAQM QASNASRNFS ASGHHVHNPM ISAFMSPPPR HILGPAPPAH  120
PQDSSWFYMS SHAPPLHVVP QGGAYFPTAA VAVPAGRNVY GRVGIRESMM RTLSQEVGNH  180
AGVLQGLSGL AGDNGGSHHQ YQLDHHNGLG LDLHLSLGSA NP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881443.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881443.11e-165zinc finger protein 6
TrEMBLA0A2I4DX611e-54A0A2I4DX61_JUGRE; zinc finger protein 6-like
STRINGEOY041604e-54(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31981316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.16e-14C2H2 family protein