PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015881407.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 806aa MW: 86874.2 Da PI: 6.5408

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015881407.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	321.7	1.5e-98	445	805	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++L ++Ae v +g+++ aq +Larl+++ sp g+p++R+a+yf+eAL+ l+ ++ + + pp++ ++ +++ ++ a+k+fsevsP+++f ++t XP_015881407.1 445 DQLDKAAELVGTGNFSHAQGILARLNHQLSPVGKPLHRAAFYFKEALQLLLLL--NNPVTSPPPRTPTPFDVIFKMGAYKVFSEVSPLIQFVNFT 537 78999*******************************************998..4445557888888999******************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..e 190 +Nqa+leav+ ++r+Hi+Dfdi+ G+QW++++q+L R++g+psl+iT+++sp++++ el ++e+L++fA+e+g++fe +v + le+ + XP_015881407.1 538 CNQALLEAVDDANRIHIVDFDIGFGAQWASFMQELPLRNRGTPSLKITAFASPSTHHPVELGLMKENLTQFANEIGISFELEVCNFDILEQTsyT 632 ******************************************************************************9755544444226 PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerik 284 l+ ++++++Ea+aVn+ + + ++++l++ +L+++k+lsP++vv ++ +d+ + +F +++l+al+ y l++sl ++++ s++ +k XP_015881407.1 633 LSVFQTNENEAVAVNFPIWSSSS--QPAALPN----LLRFIKQLSPRIVVSLDRGCDRFDLPFPQHILQALQSYIILLESLdAVNV--PSDALNK 719 67778888****9955444..6888888....******************************************55555..678899 PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er+ll+++i++ v + ++ ++ W+ + +aGF+p+++s+++++qa++++++++ +g++ve++++slvl+W++r+L+s+SaWr XP_015881407.1 720 IERFLLQPSIESTVLGRLRA----PDKMPLWKTLFASAGFTPLTFSNFTETQAECVVKRTPARGFHVEKRQASLVLYWQRRELISASAWR 805 *************99998....999************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.059	417	785	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.1E-96	445	805	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 806 aa Download sequence Send to blast
MRGMPFHWQQ GKGVLEIAAA AAAAAAEAGG FPSICAGDKW KKQELCSFAT NEPTSVLHMR 60 RSPSPPTSAS TLSSSFGGGG GGGGVGGGDG GSTDNTGGVA AGLPPHTPAA PVTEPSTGAS 120 RKNEWASELQ PIPSGLEAVT GSGGERCGLG LEDWETMLSE TAASPGQDQS LLRWIAGDVD 180 DPSFCLKQLL QGGNNPLEFD GNAGLGVVDQ GTGFDHIGGA LGGVSGTGSL MAGINPNLGF 240 PGSGSANNNN NGSGKIGSIA PSSSGGLNYK VTNIGLGSNN NGNCNMQNPI LSNSAFGLPL 300 SVSLPPGMVY QPQQQDFESP DEKPQILNPQ LLMNQQQQPH LPQNPNFFLP LEQHLLQPQP 360 KRHNSGGVDP GSQISKVPFP DPGHEFMLRK QQQHLGFPQG MQFLPQHHHQ RKPLMVPKQK 420 MVGPSEELAA HQHQHHQQQQ HALLDQLDKA AELVGTGNFS HAQGILARLN HQLSPVGKPL 480 HRAAFYFKEA LQLLLLLNNP VTSPPPRTPT PFDVIFKMGA YKVFSEVSPL IQFVNFTCNQ 540 ALLEAVDDAN RIHIVDFDIG FGAQWASFMQ ELPLRNRGTP SLKITAFASP STHHPVELGL 600 MKENLTQFAN EIGISFELEV CNFDILEQTS YTLSVFQTNE NEAVAVNFPI WSSSSQPAAL 660 PNLLRFIKQL SPRIVVSLDR GCDRFDLPFP QHILQALQSY IILLESLDAV NVPSDALNKI 720 ERFLLQPSIE STVLGRLRAP DKMPLWKTLF ASAGFTPLTF SNFTETQAEC VVKRTPARGF 780 HVEKRQASLV LYWQRRELIS ASAWRC

Sequence ? help Back to Top

Protein Sequence Length: 806 aa Download sequence Send to blast

MRGMPFHWQQ GKGVLEIAAA AAAAAAEAGG FPSICAGDKW KKQELCSFAT NEPTSVLHMR  60
RSPSPPTSAS TLSSSFGGGG GGGGVGGGDG GSTDNTGGVA AGLPPHTPAA PVTEPSTGAS  120
RKNEWASELQ PIPSGLEAVT GSGGERCGLG LEDWETMLSE TAASPGQDQS LLRWIAGDVD  180
DPSFCLKQLL QGGNNPLEFD GNAGLGVVDQ GTGFDHIGGA LGGVSGTGSL MAGINPNLGF  240
PGSGSANNNN NGSGKIGSIA PSSSGGLNYK VTNIGLGSNN NGNCNMQNPI LSNSAFGLPL  300
SVSLPPGMVY QPQQQDFESP DEKPQILNPQ LLMNQQQQPH LPQNPNFFLP LEQHLLQPQP  360
KRHNSGGVDP GSQISKVPFP DPGHEFMLRK QQQHLGFPQG MQFLPQHHHQ RKPLMVPKQK  420
MVGPSEELAA HQHQHHQQQQ HALLDQLDKA AELVGTGNFS HAQGILARLN HQLSPVGKPL  480
HRAAFYFKEA LQLLLLLNNP VTSPPPRTPT PFDVIFKMGA YKVFSEVSPL IQFVNFTCNQ  540
ALLEAVDDAN RIHIVDFDIG FGAQWASFMQ ELPLRNRGTP SLKITAFASP STHHPVELGL  600
MKENLTQFAN EIGISFELEV CNFDILEQTS YTLSVFQTNE NEAVAVNFPI WSSSSQPAAL  660
PNLLRFIKQL SPRIVVSLDR GCDRFDLPFP QHILQALQSY IILLESLDAV NVPSDALNKI  720
ERFLLQPSIE STVLGRLRAP DKMPLWKTLF ASAGFTPLTF SNFTETQAEC VVKRTPARGF  780
HVEKRQASLV LYWQRRELIS ASAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-30	462	805	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015881407.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015881407.1	0.0	scarecrow-like protein 22
TrEMBL	A0A2P5F5D3	0.0	A0A2P5F5D3_TREOI; GRAS transcription factor
STRING	XP_008238556.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13269	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-118	GRAS family protein