PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015881405.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GRAS | ||||||||
Protein Properties | Length: 238aa MW: 26906 Da PI: 7.4552 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 182.1 | 3.9e-56 | 1 | 237 | 129 | 374 |
GRAS 129 lqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsle 221 +q+L R++g+psl+iT+++sp++++ el ++e+L++fA+e+g++fe +v + le+ +l+ ++++++Ea+aVn+ + + ++++l+ XP_015881405.1 1 MQELPLRNRGTPSLKITAFASPSTHHPVELGLMKENLTQFANEIGISFELEVCNFDILEQTsyTLSVFQTNENEAVAVNFPIWSSSS--QPAALP 93 8**************************************************975554444422667778888********9955444..688888 PP GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekW 315 + +L+++k+lsP++vv ++ +d+ + +F +++l+al+ y l++sl ++++ s++ +k+Er+ll+++i++ v + ++ ++ W XP_015881405.1 94 N----LLRFIKQLSPRIVVSLDRGCDRFDLPFPQHILQALQSYIILLESLdAVNV--PSDALNKIERFLLQPSIESTVLGRLRA----PDKMPLW 178 8....*********************************************55555..678899****************99998....999**** PP GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + + +aGF+p+++s+++++qa++++++++ +g++ve++++slvl+W++r+L+s+SaWr XP_015881405.1 179 KTLFASAGFTPLTFSNFTETQAECVVKRTPARGFHVEKRQASLVLYWQRRELISASAWR 237 **********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.4E-53 | 1 | 237 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 23.171 | 1 | 217 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MQELPLRNRG TPSLKITAFA SPSTHHPVEL GLMKENLTQF ANEIGISFEL EVCNFDILEQ 60 TSYTLSVFQT NENEAVAVNF PIWSSSSQPA ALPNLLRFIK QLSPRIVVSL DRGCDRFDLP 120 FPQHILQALQ SYIILLESLD AVNVPSDALN KIERFLLQPS IESTVLGRLR APDKMPLWKT 180 LFASAGFTPL TFSNFTETQA ECVVKRTPAR GFHVEKRQAS LVLYWQRREL ISASAWRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-13 | 1 | 237 | 128 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015881405.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015881405.2 | 1e-175 | scarecrow-like protein 6 | ||||
Refseq | XP_015881407.1 | 1e-169 | scarecrow-like protein 22 | ||||
Swissprot | O81316 | 2e-77 | SCL6_ARATH; Scarecrow-like protein 6 | ||||
TrEMBL | A0A2N9GGX5 | 1e-146 | A0A2N9GGX5_FAGSY; Uncharacterized protein | ||||
STRING | XP_008238556.1 | 1e-145 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13269 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 6e-80 | GRAS family protein |
Publications ? help Back to Top | |||
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