PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015881280.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

NAC

Protein Properties

Length: 277aa MW: 31215.3 Da PI: 9.3276

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015881280.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.2	4.8e-34	51	191	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......tksg 81 lp+G++F+Ptd+el+ e+L+ kv+++ ++l+ +i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+ + XP_015881280.1 51 LPAGVKFDPTDQELL-EHLEGKVRSDAHKLHPlidefipTIEGEnGICYTHPKKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKvltdaeGGET 143 799**********.99**9994443233343333665557******.555666688**************65655332367 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v+ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l XP_015881280.1 144 RWHKTGKTRPVFY-SGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 191 8********.999*******6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.24E-38	46	210	IPR003441	NAC domain
PROSITE profile	PS51005	34	51	210	IPR003441	NAC domain
Pfam	PF02365	1.0E-15	52	191	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MTRCNDHGAD DQTIIANQGR RDHNLIRTCP SCGHQIKCTQ NQGGIHDLPG LPAGVKFDPT 60 DQELLEHLEG KVRSDAHKLH PLIDEFIPTI EGENGICYTH PKKLPGVSKD GLVRHFFHRP 120 SKAYTTGTRK RRKVLTDAEG GETRWHKTGK TRPVFYSGKV KGYKKILVLY TNYGKQRKPE 180 KTNWVMHQYH LGNNEEEKDG ELVVSKVFYQ TQPRQCGSVM KDLLPPKLKG QSGHETLVHE 240 YCNPSFISFD HGPQNGVSNA QILPHFAVHG HNGSFVS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015881280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015881279.1	0.0	NAC domain-containing protein 73-like
Refseq	XP_015881280.1	0.0	NAC domain-containing protein 73-like
Swissprot	O49459	1e-117	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A0M4FSJ0	1e-155	A0A0M4FSJ0_MANES; NAC transcription factors 91
STRING	cassava4.1_032739m	1e-156	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-120	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]