PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881278.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 472aa    MW: 51190.5 Da    PI: 9.1232
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881278.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-055777323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++Cgk F r  nL+ H r H
  XP_015881278.1 57 CEICGKGFQRDQNLQLHRRGH 77
                    *******************88 PP
2zf-C2H213.50.00022131153123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  XP_015881278.1 131 WKCEKCSKRYAVQSDWKAHSKTC 153
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.27E-65477No hitNo description
Gene3DG3DSA:3.30.160.604.1E-55477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4895577IPR007087Zinc finger, C2H2
SMARTSM003550.0765577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM0035526096126IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4119152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.27E-6126151No hitNo description
SMARTSM00355130131151IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAEEAISSGF VQNPISGGSD NPPAVKKKRN LPGTPDPEAE VIALSPKTLM ATNRFLCEIC  60
GKGFQRDQNL QLHRRGHNLP WKLKQRTSKE PRKRVYVCPE KSCVHNHPSR ALGDLTGIKK  120
HFCRKHGEKK WKCEKCSKRY AVQSDWKAHS KTCGTREYKC DCGTLFSRRD SFITHRAFCD  180
ALAEETARLN AASNISNSMA AGNINYHFIG TSLAPTMATQ PFPSVFKPIS SNAETIIRQT  240
TRGLSVWMGQ GSQGHEPLAA NNTTLQDQIH QFGPAVSSVG TLFGDPLVSC SNPPAPSDYQ  300
LNWVFGSKIS SNNAHEDQLT SSTTSLPLSD VKGGGTQLIN VPSLYSTQHH SHQTPSANMS  360
ATALLQKAAQ IGATSTDSSF LGSFGLKCSN NNGGQVQEGN KFCGLYCSNA MSRSHGSSVE  420
NPEADVPQMY PAAKRRHVQS SEEGAGRGGQ TRDFLGVGVQ TICHPSSING WI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-37127194370Zinc finger protein JACKDAW
5b3h_F4e-37127194370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881278.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881278.10.0zinc finger protein NUTCRACKER-like
RefseqXP_024928109.10.0zinc finger protein NUTCRACKER-like
SwissprotQ9FFH31e-157IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLA0A2N9FGW20.0A0A2N9FGW2_FAGSY; Uncharacterized protein
STRINGEOX995370.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-149C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]