PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015881269.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HB-other | ||||||||
Protein Properties | Length: 1756aa MW: 196987 Da PI: 5.3145 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.5e-18 | 18 | 74 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t++qle+Le+ ++ ++yps++ r+eL++klgL++rq ++WF+ rR k++k XP_015881269.1 18 KTKRKMKTASQLEILEKTYAVESYPSESLRAELSSKLGLSDRQLQMWFCHRRLKDRK 74 6799***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 4 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.57E-15 | 13 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.746 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-16 | 17 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.64E-13 | 18 | 74 | No hit | No description |
Pfam | PF00046 | 5.2E-16 | 18 | 74 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 17.399 | 524 | 583 | IPR018501 | DDT domain |
SMART | SM00571 | 3.1E-23 | 524 | 583 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.8E-17 | 525 | 580 | IPR018501 | DDT domain |
Pfam | PF05066 | 3.1E-15 | 706 | 774 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 1.6E-8 | 927 | 968 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 1.8E-13 | 1110 | 1182 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1756 aa Download sequence Send to blast |
MEAGSEGEKK KPPEGENKTK RKMKTASQLE ILEKTYAVES YPSESLRAEL SSKLGLSDRQ 60 LQMWFCHRRL KDRKVAPVKR SRKESPVVVG IEGGSGGKMV VGDVGNEHIS GLGLGSSSFG 120 HSVDSRRVLA RPSLAVPRIG GDIPFIKRYY EPQQSIVELR AIAFVEAQLG EPLREDGPIL 180 GMEFDPLPPD AFGTPIGTSI VGQQKQSARS FDAKIYDQSD AKSVKVAARA LHEYQFIPEQ 240 PTVRLDSYER FTPSYQYGSP LDGPNAKTSS IPTGHLFIHG NEQLPSGYGF QGQITGLNLL 300 SQQGRPNHLL PSISGEYDKV QRKNTKINMD AHPISQLENP FMLSDRRVTH DEDVIRVERK 360 RKSEEAKIAR EVEAHEKRIR KELEKQDILR RKREEQIRKE MERHDRERRK EEERLLREKQ 420 REEERYQREQ RRELERREKF LLKESIRAEK MRQKEELRRE KEAARLKAAN ERAIARRIAK 480 ESMELIEDER LELMELAASS KGLPSIASLD YESLQNLDSY RGSEENIGNL LMVWRFLITF 540 ADVLGLWPFT LDEFIQAFHD YDSRLLGEIH VSLLRSIIKD IEDVARTPSM GLGANQNGTA 600 NPGGGHPEIV EGAYAWGFDI RSWQHNLNPL TWPEILRQFA LSAGLGPQLK KRNVEPVCLR 660 DDNEGNDGKD IISNLRNGAA VENAFAIMQE RGFSNPRRSR HRLTPGTVKF AAFHVLSLEG 720 NKGLTILEVA DRIQKSGLRD LTTSKTPEAS IAAALSRDSK LFERTAPSTY CVRASYRKDP 780 ADAESILASA RERIRIFKSG VLDGEDAEDA ERDDDSESDA AEDPEVDDLG TEINPIKEAG 840 DFQELNKFNA KTLLGNGKES SHHILETPEK DLRNIDEGLS AIDSEGHVKM KDTSLSYGQT 900 GQTVDVAGMD ASTIDQEDAD IDGSHLGEPW VQGLMEGEYS DLSVEERLNA LAALIGVAIE 960 GNSIRLILEV RLEAANALKK QMWAEVQLDK RRMKEEYIMR MHYSSLMGNK FEPNVTNSSA 1020 GGGPSPFLTV GDKNNETTVD LSVQEEQIND LHTENNYISS FPSERNLQMQ EVPTGPDNHL 1080 FPQSGCAADR SRSQLKSYIG YKAEEMYVYR SLPLGQDRRR NRYWQFITSA SPNDPGCGRI 1140 FVELQDGRWR LIDSEEGFDA LLASLDVRGI RESQLHTMLQ KIGVSFKKIV KKSMLHDNVG 1200 RECEHNVKKE TVEMTLHPDF SIGNDSPSST VCLADSDMLE TSTSFVIELG RNEIEKNSAL 1260 KRYQDLEKWI WKECFSSSMI CAIKDGKKRC KQLLNICDYC SSIYSSEDNH CPSCHRIYAT 1320 SESGFNFSEH LAQCKRKLKL EEHCALHGSS FVPQRIRMLK MLLSLVEVSV PPEALQSLWT 1380 ESHRKSWGIE LTSSSSAKDL LQVLTVLEGA VKRDYLSSNF ETTNELLDSS NPVRFAATNS 1440 TLSKSVTILP WIPLTTAAVA LRLMEFDAAI SYTLQQKVES RKNKESGDLN KHPSTHAVLK 1500 SSVSAETLST TCQANNLQEE NWADPGIGLD SFGRGRGSRG GAYGRTRSGR SQRRAIGSRA 1560 ESVKHNAATN NERLGQVLEW EGRSRGHGHR RGRRSIRSRQ KPSKKMVEIG GERSSPKEGT 1620 SDKSPRSLVN AWNRVETANF QLEGAELASS SGRSEYDDEN GQASEDEYDD MVVDDYATGL 1680 NGKSDDLLDG SDYNVNGDED EADDDVEDEE EDGEGDFDVD RYINGDSDGE ENRAGDEEQN 1740 MKLNEGTGST SSEYSD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015881269.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF266223 | 9e-72 | KF266223.1 Ziziphus jujuba microsatellite SSR723 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015881267.1 | 0.0 | homeobox-DDT domain protein RLT2 isoform X1 | ||||
Swissprot | Q9FFH1 | 0.0 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A2I4F9F2 | 0.0 | A0A2I4F9F2_JUGRE; homeobox-DDT domain protein RLT2-like isoform X1 | ||||
STRING | XP_010093958.1 | 0.0 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |