PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015881268.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

HB-other

Protein Properties

Length: 1756aa MW: 197266 Da PI: 5.3723

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015881268.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	18	74	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t++qle+Le+ ++ ++yps++ r+eL++klgL++rq ++WF+ rR k++k XP_015881268.1 18 KTKRKMKTASQLEILEKTYAVESYPSESLRAELSSKLGLSDRQLQMWFCHRRLKDRK 74 6799***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-17	4	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.57E-15	13	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.746	15	75	IPR001356	Homeobox domain
SMART	SM00389	1.4E-16	17	79	IPR001356	Homeobox domain
CDD	cd00086	2.96E-13	18	74	No hit	No description
Pfam	PF00046	5.2E-16	18	74	IPR001356	Homeobox domain
PROSITE profile	PS50827	17.399	524	583	IPR018501	DDT domain
SMART	SM00571	3.1E-23	524	583	IPR018501	DDT domain
Pfam	PF02791	1.8E-17	525	580	IPR018501	DDT domain
Pfam	PF05066	3.1E-15	706	774	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.6E-8	927	968	IPR028942	WHIM1 domain
Pfam	PF15613	1.8E-13	1110	1182	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1756 aa Download sequence Send to blast
MEAGSEGEKK KPPEGENKTK RKMKTASQLE ILEKTYAVES YPSESLRAEL SSKLGLSDRQ 60 LQMWFCHRRL KDRKVAPVKR SRKESPVVVG IEGGSGGKMV VGDVGNEHIS GLGLGSSSFG 120 HSVDSRRVLA RPSLAVPRIG GDIPFIKRYY EPQQSIVELR AIAFVEAQLG EPLREDGPIL 180 GMEFDPLPPD AFGTPIGTSI VGQQKQSARS FDAKIYDQSD AKSVKVAARA LHEYQFIPEQ 240 PTVRLDSYER FTPSYQYGSP LDGPNAKTSS IPTGHLFIHG NEQLPSGYGF QGEYDKVQRK 300 NTKINMDAHP ISQLENPFML SDRRVTHDED VIRVERKRKS EEAKIAREVE AHEKRIRKEL 360 EKQDILRRKR EEQIRKEMER HDRERRKEEE RLLREKQREE ERYQREQRRE LERREKFLLK 420 ESIRAEKMRQ KEELRREKEA ARLKAANERA IARRIAKESM ELIEDERLEL MELAASSKGL 480 PSIASLDYES LQNLDSYRDM RNSFPPKSVH LKRPFAIQPW AGSEENIGNL LMVWRFLITF 540 ADVLGLWPFT LDEFIQAFHD YDSRLLGEIH VSLLRSIIKD IEDVARTPSM GLGANQNGTA 600 NPGGGHPEIV EGAYAWGFDI RSWQHNLNPL TWPEILRQFA LSAGLGPQLK KRNVEPVCLR 660 DDNEGNDGKD IISNLRNGAA VENAFAIMQE RGFSNPRRSR HRLTPGTVKF AAFHVLSLEG 720 NKGLTILEVA DRIQKSGLRD LTTSKTPEAS IAAALSRDSK LFERTAPSTY CVRASYRKDP 780 ADAESILASA RERIRIFKSG VLDGEDAEDA ERDDDSESDA AEDPEVDDLG TEINPIKEAG 840 DFQELNKFNA KTLLGNGKES SHHILETPEK DLRNIDEGLS AIDSEGHVKM KDTSLSYGQT 900 GQTVDVAGMD ASTIDQEDAD IDGSHLGEPW VQGLMEGEYS DLSVEERLNA LAALIGVAIE 960 GNSIRLILEV RLEAANALKK QMWAEVQLDK RRMKEEYIMR MHYSSLMGNK FEPNVTNSSA 1020 GGGPSPFLTV GDKNNETTVD LSVQEEQIND LHTENNYISS FPSERNLQMQ EVPTGPDNHL 1080 FPQSGCAADR SRSQLKSYIG YKAEEMYVYR SLPLGQDRRR NRYWQFITSA SPNDPGCGRI 1140 FVELQDGRWR LIDSEEGFDA LLASLDVRGI RESQLHTMLQ KIGVSFKKIV KKSMLHDNVG 1200 RECEHNVKKE TVEMTLHPDF SIGNDSPSST VCLADSDMLE TSTSFVIELG RNEIEKNSAL 1260 KRYQDLEKWI WKECFSSSMI CAIKDGKKRC KQLLNICDYC SSIYSSEDNH CPSCHRIYAT 1320 SESGFNFSEH LAQCKRKLKL EEHCALHGSS FVPQRIRMLK MLLSLVEVSV PPEALQSLWT 1380 ESHRKSWGIE LTSSSSAKDL LQVLTVLEGA VKRDYLSSNF ETTNELLDSS NPVRFAATNS 1440 TLSKSVTILP WIPLTTAAVA LRLMEFDAAI SYTLQQKVES RKNKESGDLN KHPSTHAVLK 1500 SSVSAETLST TCQANNLQEE NWADPGIGLD SFGRGRGSRG GAYGRTRSGR SQRRAIGSRA 1560 ESVKHNAATN NERLGQVLEW EGRSRGHGHR RGRRSIRSRQ KPSKKMVEIG GERSSPKEGT 1620 SDKSPRSLVN AWNRVETANF QLEGAELASS SGRSEYDDEN GQASEDEYDD MVVDDYATGL 1680 NGKSDDLLDG SDYNVNGDED EADDDVEDEE EDGEGDFDVD RYINGDSDGE ENRAGDEEQN 1740 MKLNEGTGST SSEYSD

Sequence ? help Back to Top

Protein Sequence Length: 1756 aa Download sequence Send to blast

MEAGSEGEKK KPPEGENKTK RKMKTASQLE ILEKTYAVES YPSESLRAEL SSKLGLSDRQ  60
LQMWFCHRRL KDRKVAPVKR SRKESPVVVG IEGGSGGKMV VGDVGNEHIS GLGLGSSSFG  120
HSVDSRRVLA RPSLAVPRIG GDIPFIKRYY EPQQSIVELR AIAFVEAQLG EPLREDGPIL  180
GMEFDPLPPD AFGTPIGTSI VGQQKQSARS FDAKIYDQSD AKSVKVAARA LHEYQFIPEQ  240
PTVRLDSYER FTPSYQYGSP LDGPNAKTSS IPTGHLFIHG NEQLPSGYGF QGEYDKVQRK  300
NTKINMDAHP ISQLENPFML SDRRVTHDED VIRVERKRKS EEAKIAREVE AHEKRIRKEL  360
EKQDILRRKR EEQIRKEMER HDRERRKEEE RLLREKQREE ERYQREQRRE LERREKFLLK  420
ESIRAEKMRQ KEELRREKEA ARLKAANERA IARRIAKESM ELIEDERLEL MELAASSKGL  480
PSIASLDYES LQNLDSYRDM RNSFPPKSVH LKRPFAIQPW AGSEENIGNL LMVWRFLITF  540
ADVLGLWPFT LDEFIQAFHD YDSRLLGEIH VSLLRSIIKD IEDVARTPSM GLGANQNGTA  600
NPGGGHPEIV EGAYAWGFDI RSWQHNLNPL TWPEILRQFA LSAGLGPQLK KRNVEPVCLR  660
DDNEGNDGKD IISNLRNGAA VENAFAIMQE RGFSNPRRSR HRLTPGTVKF AAFHVLSLEG  720
NKGLTILEVA DRIQKSGLRD LTTSKTPEAS IAAALSRDSK LFERTAPSTY CVRASYRKDP  780
ADAESILASA RERIRIFKSG VLDGEDAEDA ERDDDSESDA AEDPEVDDLG TEINPIKEAG  840
DFQELNKFNA KTLLGNGKES SHHILETPEK DLRNIDEGLS AIDSEGHVKM KDTSLSYGQT  900
GQTVDVAGMD ASTIDQEDAD IDGSHLGEPW VQGLMEGEYS DLSVEERLNA LAALIGVAIE  960
GNSIRLILEV RLEAANALKK QMWAEVQLDK RRMKEEYIMR MHYSSLMGNK FEPNVTNSSA  1020
GGGPSPFLTV GDKNNETTVD LSVQEEQIND LHTENNYISS FPSERNLQMQ EVPTGPDNHL  1080
FPQSGCAADR SRSQLKSYIG YKAEEMYVYR SLPLGQDRRR NRYWQFITSA SPNDPGCGRI  1140
FVELQDGRWR LIDSEEGFDA LLASLDVRGI RESQLHTMLQ KIGVSFKKIV KKSMLHDNVG  1200
RECEHNVKKE TVEMTLHPDF SIGNDSPSST VCLADSDMLE TSTSFVIELG RNEIEKNSAL  1260
KRYQDLEKWI WKECFSSSMI CAIKDGKKRC KQLLNICDYC SSIYSSEDNH CPSCHRIYAT  1320
SESGFNFSEH LAQCKRKLKL EEHCALHGSS FVPQRIRMLK MLLSLVEVSV PPEALQSLWT  1380
ESHRKSWGIE LTSSSSAKDL LQVLTVLEGA VKRDYLSSNF ETTNELLDSS NPVRFAATNS  1440
TLSKSVTILP WIPLTTAAVA LRLMEFDAAI SYTLQQKVES RKNKESGDLN KHPSTHAVLK  1500
SSVSAETLST TCQANNLQEE NWADPGIGLD SFGRGRGSRG GAYGRTRSGR SQRRAIGSRA  1560
ESVKHNAATN NERLGQVLEW EGRSRGHGHR RGRRSIRSRQ KPSKKMVEIG GERSSPKEGT  1620
SDKSPRSLVN AWNRVETANF QLEGAELASS SGRSEYDDEN GQASEDEYDD MVVDDYATGL  1680
NGKSDDLLDG SDYNVNGDED EADDDVEDEE EDGEGDFDVD RYINGDSDGE ENRAGDEEQN  1740
MKLNEGTGST SSEYSD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015881268.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF266223	9e-72	KF266223.1 Ziziphus jujuba microsatellite SSR723 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015881268.1	0.0	homeobox-DDT domain protein RLT2 isoform X2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2I4F9F2	0.0	A0A2I4F9F2_JUGRE; homeobox-DDT domain protein RLT2-like isoform X1
STRING	XP_010093958.1	0.0	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator