PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015881267.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HB-other | ||||||||
Protein Properties | Length: 1779aa MW: 199692 Da PI: 5.4316 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.6e-18 | 18 | 74 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t++qle+Le+ ++ ++yps++ r+eL++klgL++rq ++WF+ rR k++k XP_015881267.1 18 KTKRKMKTASQLEILEKTYAVESYPSESLRAELSSKLGLSDRQLQMWFCHRRLKDRK 74 6799***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 4 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.61E-15 | 13 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.746 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-16 | 17 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.87E-13 | 18 | 74 | No hit | No description |
Pfam | PF00046 | 5.3E-16 | 18 | 74 | IPR001356 | Homeobox domain |
SMART | SM00571 | 3.1E-23 | 547 | 606 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 17.399 | 547 | 606 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.9E-17 | 548 | 603 | IPR018501 | DDT domain |
Pfam | PF05066 | 3.1E-15 | 729 | 797 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 1.6E-8 | 950 | 991 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 1.8E-13 | 1133 | 1205 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1779 aa Download sequence Send to blast |
MEAGSEGEKK KPPEGENKTK RKMKTASQLE ILEKTYAVES YPSESLRAEL SSKLGLSDRQ 60 LQMWFCHRRL KDRKVAPVKR SRKESPVVVG IEGGSGGKMV VGDVGNEHIS GLGLGSSSFG 120 HSVDSRRVLA RPSLAVPRIG GDIPFIKRYY EPQQSIVELR AIAFVEAQLG EPLREDGPIL 180 GMEFDPLPPD AFGTPIGTSI VGQQKQSARS FDAKIYDQSD AKSVKVAARA LHEYQFIPEQ 240 PTVRLDSYER FTPSYQYGSP LDGPNAKTSS IPTGHLFIHG NEQLPSGYGF QGQITGLNLL 300 SQQGRPNHLL PSISGEYDKV QRKNTKINMD AHPISQLENP FMLSDRRVTH DEDVIRVERK 360 RKSEEAKIAR EVEAHEKRIR KELEKQDILR RKREEQIRKE MERHDRERRK EEERLLREKQ 420 REEERYQREQ RRELERREKF LLKESIRAEK MRQKEELRRE KEAARLKAAN ERAIARRIAK 480 ESMELIEDER LELMELAASS KGLPSIASLD YESLQNLDSY RDMRNSFPPK SVHLKRPFAI 540 QPWAGSEENI GNLLMVWRFL ITFADVLGLW PFTLDEFIQA FHDYDSRLLG EIHVSLLRSI 600 IKDIEDVART PSMGLGANQN GTANPGGGHP EIVEGAYAWG FDIRSWQHNL NPLTWPEILR 660 QFALSAGLGP QLKKRNVEPV CLRDDNEGND GKDIISNLRN GAAVENAFAI MQERGFSNPR 720 RSRHRLTPGT VKFAAFHVLS LEGNKGLTIL EVADRIQKSG LRDLTTSKTP EASIAAALSR 780 DSKLFERTAP STYCVRASYR KDPADAESIL ASARERIRIF KSGVLDGEDA EDAERDDDSE 840 SDAAEDPEVD DLGTEINPIK EAGDFQELNK FNAKTLLGNG KESSHHILET PEKDLRNIDE 900 GLSAIDSEGH VKMKDTSLSY GQTGQTVDVA GMDASTIDQE DADIDGSHLG EPWVQGLMEG 960 EYSDLSVEER LNALAALIGV AIEGNSIRLI LEVRLEAANA LKKQMWAEVQ LDKRRMKEEY 1020 IMRMHYSSLM GNKFEPNVTN SSAGGGPSPF LTVGDKNNET TVDLSVQEEQ INDLHTENNY 1080 ISSFPSERNL QMQEVPTGPD NHLFPQSGCA ADRSRSQLKS YIGYKAEEMY VYRSLPLGQD 1140 RRRNRYWQFI TSASPNDPGC GRIFVELQDG RWRLIDSEEG FDALLASLDV RGIRESQLHT 1200 MLQKIGVSFK KIVKKSMLHD NVGRECEHNV KKETVEMTLH PDFSIGNDSP SSTVCLADSD 1260 MLETSTSFVI ELGRNEIEKN SALKRYQDLE KWIWKECFSS SMICAIKDGK KRCKQLLNIC 1320 DYCSSIYSSE DNHCPSCHRI YATSESGFNF SEHLAQCKRK LKLEEHCALH GSSFVPQRIR 1380 MLKMLLSLVE VSVPPEALQS LWTESHRKSW GIELTSSSSA KDLLQVLTVL EGAVKRDYLS 1440 SNFETTNELL DSSNPVRFAA TNSTLSKSVT ILPWIPLTTA AVALRLMEFD AAISYTLQQK 1500 VESRKNKESG DLNKHPSTHA VLKSSVSAET LSTTCQANNL QEENWADPGI GLDSFGRGRG 1560 SRGGAYGRTR SGRSQRRAIG SRAESVKHNA ATNNERLGQV LEWEGRSRGH GHRRGRRSIR 1620 SRQKPSKKMV EIGGERSSPK EGTSDKSPRS LVNAWNRVET ANFQLEGAEL ASSSGRSEYD 1680 DENGQASEDE YDDMVVDDYA TGLNGKSDDL LDGSDYNVNG DEDEADDDVE DEEEDGEGDF 1740 DVDRYINGDS DGEENRAGDE EQNMKLNEGT GSTSSEYSD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015881267.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF266223 | 9e-72 | KF266223.1 Ziziphus jujuba microsatellite SSR723 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015881267.1 | 0.0 | homeobox-DDT domain protein RLT2 isoform X1 | ||||
Swissprot | Q9FFH1 | 0.0 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A2I4F9F2 | 0.0 | A0A2I4F9F2_JUGRE; homeobox-DDT domain protein RLT2-like isoform X1 | ||||
STRING | XP_010093958.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2523 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |