PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881221.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 437aa    MW: 47667.6 Da    PI: 8.259
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881221.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-114772126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C +++rtG C yG++C+F+H+
  XP_015881221.1 47 PGEPDCIYYLRTGLCGYGSNCRFNHP 72
                    5789*********************8 PP
2zf-CCCH38.51.9e-1291115327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tGtCkyG++CkF+H++
  XP_015881221.1  91 QPDCGYFLKTGTCKYGSTCKFHHPR 115
                     789********************96 PP
3zf-CCCH38.22.3e-12138160527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++++rtG Ck+G+ CkF+H++
  XP_015881221.1 138 SCPYYMRTGACKFGPACKFHHPQ 160
                     6********************97 PP
4zf-CCCH38.12.5e-12282307227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+f+ tGtCkyG  Ck++H++
  XP_015881221.1 282 DQPECRYFMNTGTCKYGTDCKYHHPK 307
                     689*********************96 PP
5zf-CCCH33.66.5e-11325349226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C+++  +G+CkyG++C+F H+
  XP_015881221.1 325 GQAVCSYYTMYGICKYGPTCRFDHP 349
                     7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2634674IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-54673IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-94872IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-55172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-45271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.79388116IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-688115IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-1091115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-692117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-594115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-6132161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774133161IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5135160IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10137160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-5138159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.201280308IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5280307IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9282307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-6283308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5286307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5323349IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145323351IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-7323350IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-8325349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4328348IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MPDARQPPKN AIPNKSDGNI EAIWRLKIND NQDGNGMAQS NLYPDRPGEP DCIYYLRTGL  60
CGYGSNCRFN HPAYISQGAQ YTRELPERVG QPDCGYFLKT GTCKYGSTCK FHHPRDRRGA  120
GPVLFNILGL PMRQEEKSCP YYMRTGACKF GPACKFHHPQ PTSLGTTLPI AGPAAFGSTG  180
SPVLPSSGLP YTGGLPAWSL PRVPYLSVPH LQAPQPYMPL VVSPSQGIQG WNTYLGNMSP  240
VSSSGILGSN LVYNSKNPGD SGSSGQVNLL SNSSPSLPER PDQPECRYFM NTGTCKYGTD  300
CKYHHPKERI VQSATNQLGL PSRPGQAVCS YYTMYGICKY GPTCRFDHPL VAQPYNYSVS  360
LPAMLDPTFL SYPRSFPTSH TTETSQSMSS KFVDVVQKPL SNKHQIPDTR ISEESAEQGG  420
SLPQSPSSSE PLDDQSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881221.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881221.10.0zinc finger CCCH domain-containing protein 3-like isoform X2
TrEMBLA0A2P5EQH20.0A0A2P5EQH2_TREOI; Zinc finger, CCCH-type
TrEMBLM5WRX40.0M5WRX4_PRUPE; Uncharacterized protein
STRINGEMJ165520.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-117C3H family protein