PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881220.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 438aa    MW: 47796.7 Da    PI: 8.1536
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.2e-114873126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C +++rtG C yG++C+F+H+
  XP_015881220.1 48 PGEPDCIYYLRTGLCGYGSNCRFNHP 73
                    5789*********************8 PP
2zf-CCCH38.51.9e-1292116327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tGtCkyG++CkF+H++
  XP_015881220.1  92 QPDCGYFLKTGTCKYGSTCKFHHPR 116
                     789********************96 PP
3zf-CCCH38.22.4e-12139161527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++++rtG Ck+G+ CkF+H++
  XP_015881220.1 139 SCPYYMRTGACKFGPACKFHHPQ 161
                     6********************97 PP
4zf-CCCH38.12.6e-12283308227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+f+ tGtCkyG  Ck++H++
  XP_015881220.1 283 DQPECRYFMNTGTCKYGTDCKYHHPK 308
                     689*********************96 PP
5zf-CCCH33.66.5e-11326350226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C+++  +G+CkyG++C+F H+
  XP_015881220.1 326 GQAVCSYYTMYGICKYGPTCRFDHP 350
                     7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-54774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2634775IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-94973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-55273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-45372IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-689116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.79389117IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-1092116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-693118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-595116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-6133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774134162IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5136161IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10138161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-5139160IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5281308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.201281309IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9283308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-6284309IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5287308IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-7324351IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5324350IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145324352IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-8326350IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4329349IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MPDARQPPKN AIPNKSDGNI EEAIWRLKIN DNQDGNGMAQ SNLYPDRPGE PDCIYYLRTG  60
LCGYGSNCRF NHPAYISQGA QYTRELPERV GQPDCGYFLK TGTCKYGSTC KFHHPRDRRG  120
AGPVLFNILG LPMRQEEKSC PYYMRTGACK FGPACKFHHP QPTSLGTTLP IAGPAAFGST  180
GSPVLPSSGL PYTGGLPAWS LPRVPYLSVP HLQAPQPYMP LVVSPSQGIQ GWNTYLGNMS  240
PVSSSGILGS NLVYNSKNPG DSGSSGQVNL LSNSSPSLPE RPDQPECRYF MNTGTCKYGT  300
DCKYHHPKER IVQSATNQLG LPSRPGQAVC SYYTMYGICK YGPTCRFDHP LVAQPYNYSV  360
SLPAMLDPTF LSYPRSFPTS HTTETSQSMS SKFVDVVQKP LSNKHQIPDT RISEESAEQG  420
GSLPQSPSSS EPLDDQSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881220.10.0zinc finger CCCH domain-containing protein 3-like isoform X1
TrEMBLM5WRX40.0M5WRX4_PRUPE; Uncharacterized protein
STRINGEMJ165520.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-119C3H family protein