PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881171.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 474aa    MW: 52804.2 Da    PI: 5.1101
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881171.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS398.19.4e-122794733373
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal................ 81 
                     +lL++cAe ++++d+++a+++++ l  ++sp+gd+++Rla+ f++AL  rl+ + +++  + ++++t++++++++++ +                
  XP_015881171.1  79 KLLITCAELIAHSDFSAAHRMVSILFANSSPYGDSTERLAHQFARALFLRLNPNPTTTTTTTTTTTTTTTTTTTTTTTTtgtgtstttataassd 173
                     79**************************************************9444444444333333333333333335889999999999999 PP

            GRAS  82 ........klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetge 163
                              ++++++P+++f+hltaNqaIlea++++ +++Hi+Dfdi++G+QWp+++qaLa+R+    ++pp+lRiT+ g     + + l++tg+
  XP_015881171.1 174 asaiqscyLTLNQITPFIRFTHLTANQAILEAIDEDqQAIHILDFDIMHGVQWPPFMQALAERSfntlRPPPMLRITATGT----DLDLLNRTGD 264
                     9999886555***********************998799*************************999999***********....9********* PP

            GRAS 164 rLakfAeelgvpfefnvl..vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                     rL +fA++lg++f+f++l  + +++++l ++ L++ p+EalaVn+++ lhrll+ +   +   d +L+ +k l+Pk+v+++e+ea+hns+ Fl+r
  XP_015881171.1 265 RLLRFAQSLGLRFQFHPLllLPDNVNTL-PSGLSLLPDEALAVNCMMYLHRLLEGQDGYD--YDCFLQKIKALNPKIVTIAEREAEHNSPVFLQR 356
                     *****************96666788888.9***********************4444444..6******************************** PP

            GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350
                     f++al+yy+a+fd+lea+lp++s+er +vE++++g+eiv+v+a  g+  r+r e++e+W++ l+ +GF++vpls +a +qaklllr ++ s+gy+
  XP_015881171.1 357 FVDALDYYAAIFDCLEANLPPNSRERLSVEQVWFGKEIVDVIAEDGDG-RQRSERYETWESLLRGCGFSNVPLSPFALSQAKLLLRLHYpSEGYQ 450
                     ***********************************************9.89******************************************** PP

            GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                     +   ++s++lgW++rpL+svS+W
  XP_015881171.1 451 LRILNDSFFLGWQSRPLFSVSSW 473
                     *********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.43751453IPR005202Transcription factor GRAS
PfamPF035143.3E-11979473IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MGSFNSSHQQ QPQEQQEQQE EEAAAAAAHL SSSDLQIYQQ QQQQPSEIGF TTTITNTTTT  60
ATTTSSLTTP HAHLNLSTKL LITCAELIAH SDFSAAHRMV SILFANSSPY GDSTERLAHQ  120
FARALFLRLN PNPTTTTTTT TTTTTTTTTT TTTTTTTTGT GTSTTTATAA SSDASAIQSC  180
YLTLNQITPF IRFTHLTANQ AILEAIDEDQ QAIHILDFDI MHGVQWPPFM QALAERSFNT  240
LRPPPMLRIT ATGTDLDLLN RTGDRLLRFA QSLGLRFQFH PLLLLPDNVN TLPSGLSLLP  300
DEALAVNCMM YLHRLLEGQD GYDYDCFLQK IKALNPKIVT IAEREAEHNS PVFLQRFVDA  360
LDYYAAIFDC LEANLPPNSR ERLSVEQVWF GKEIVDVIAE DGDGRQRSER YETWESLLRG  420
CGFSNVPLSP FALSQAKLLL RLHYPSEGYQ LRILNDSFFL GWQSRPLFSV SSWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-638447325377Protein SCARECROW
5b3h_D7e-638447325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881171.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024932109.10.0scarecrow-like protein 18
SwissprotQ9ZWC51e-136SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A2N9J8W00.0A0A2N9J8W0_FAGSY; Uncharacterized protein
STRINGcassava4.1_022846m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129262133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-130GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]