PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015881152.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | TALE | ||||||||
Protein Properties | Length: 329aa MW: 37118.8 Da PI: 7.624 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.7 | 9.3e-09 | 256 | 290 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+ +q+ +WF N+R ++ XP_015881152.1 256 KWPYPSEAQKLALAESTGLDLKQINNWFINQRKRH 290 569*****************************885 PP | |||||||
2 | ELK | 40.7 | 4.8e-14 | 210 | 231 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKY+gyLgsLkqEF+ XP_015881152.1 210 ELKVQLLRKYGGYLGSLKQEFL 231 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 9.2E-18 | 85 | 129 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.8E-21 | 87 | 125 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.0E-25 | 145 | 196 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.8E-22 | 148 | 194 | IPR005541 | KNOX2 |
Pfam | PF03789 | 8.8E-10 | 210 | 231 | IPR005539 | ELK domain |
SMART | SM01188 | 4.1E-7 | 210 | 231 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.278 | 210 | 230 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.872 | 230 | 293 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-11 | 232 | 297 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.27E-19 | 232 | 308 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.6E-28 | 235 | 294 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.11E-12 | 242 | 294 | No hit | No description |
Pfam | PF05920 | 5.6E-17 | 250 | 289 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 268 | 291 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MEGGGNNMMM GFGENSSSGF SGAEINRRFH HHHHLHLPLS NNNNNNNSSN NNSISNNQQN 60 TCSGAGGSQR VSSAMNINIP QESNTCMKAK IMAHPLFPRL LEAYINCQKV GAPPEVVARL 120 EQACSSVTTT NSSSSEAMDV SRTSTTVSIG EDPALDQFME AYCEMLTKYE QELTKPFKEA 180 MLFLARIESQ LKALAVSSSD SADPQTEDRE LKVQLLRKYG GYLGSLKQEF LKKKKNGKLP 240 KEARQQLLDW WSRHYKWPYP SEAQKLALAE STGLDLKQIN NWFINQRKRH WKPSEDLQFV 300 VMDAAHHPHY YMDTMMYNPF PMDCSSSLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015881152.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ281774 | 5e-85 | GQ281774.1 Prunus persica class I KNOX homeobox transcription factor STM-like 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015881152.1 | 0.0 | homeobox protein SBH1-like isoform X2 | ||||
Swissprot | P46608 | 1e-119 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A2N9GK57 | 1e-134 | A0A2N9GK57_FAGSY; Uncharacterized protein | ||||
STRING | XP_010089440.1 | 1e-131 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-105 | KNOX/ELK homeobox transcription factor |
Publications ? help Back to Top | |||
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