PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881061.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family M-type_MADS
Protein Properties Length: 113aa    MW: 13096 Da    PI: 9.1126
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881061.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.32.3e-241059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +i+n   r++t+skRr gilKKA+ELSvLCda+v +++fs++g+l  +ss
  XP_015881061.1 10 KIDNPCSRHTTYSKRRDGILKKASELSVLCDADVGLLMFSPSGRLTSFSS 59
                    599********************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.866161IPR002100Transcription factor, MADS-box
SMARTSM004329.1E-30160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-25275IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MGRQKRLMMK IDNPCSRHTT YSKRRDGILK KASELSVLCD ADVGLLMFSP SGRLTSFSSN  60
GRIEDVFLRY VDQPNELRGG PVSNEDYFYQ RLRELKHEGE MLEKLSKYDF LSP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881061.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881061.22e-75agamous-like MADS-box protein AGL104
SwissprotQ6Z6W22e-24MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBLA0A2Z7A8562e-49A0A2Z7A856_9LAMI; AGAMOUS-like 66 isoform 1
STRINGEOX991895e-47(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1753967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.11e-26AGAMOUS-like 66
Publications ? help Back to Top
  1. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
    [PMID:23463009]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  4. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]