PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880872.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CO-like
Protein Properties Length: 412aa    MW: 44702.7 Da    PI: 4.705
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880872.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.3e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ +++++   +C+++  +lC +C  + H+       H++
  XP_015880872.1  4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                    7*****************************65677777766 PP
2zf-B_box23.71e-074689441
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C++++++++   C + ++ lC++C   +H +      H++++
  XP_015880872.1 46 LLCERCNSQPALVRCSEERVSLCQNCDWMGHGNstsassHKRQT 89
                    57*****************************5589999999876 PP
3CCT62.99.7e-22355398144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R  a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ 
  XP_015880872.1 355 RSDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 398
                     889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.684147IPR000315B-box-type zinc finger
CDDcd000211.00E-6447No hitNo description
SMARTSM003363.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.1154390IPR000315B-box-type zinc finger
CDDcd000211.35E-44790No hitNo description
SMARTSM003360.914890IPR000315B-box-type zinc finger
PfamPF062032.0E-16355397IPR010402CCT domain
PROSITE profilePS5101715.418355397IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC  60
SEERVSLCQN CDWMGHGNST SASSHKRQTI NCYSGCPSAA ELSSIWSFVL DFPSVGESAC  120
EQEMGMMSIT ENSTENAWDS SENASGSARV NDVPSMDNKP SLWACSSSVP EHNSAAQVLD  180
QPVGSASVTL PKLCCPGTKG PGLCEDDDLY EDFNMDEMDL NLENYEELFG MALNNSEELL  240
ENGGIDSLFG TKDMSGADSN CQGAVAAEGS SVGLVNAMQP ACSNAASADS VMSTKTEPIL  300
CFNTKQAHSN LSFSGLTGES SAGDYQDCGA SSMLLMGEPP WCPPPCQENL QSASRSDAVM  360
RYKEKKKTRK FEKRVRYASR KARADVRKRV KGRFVKAGDA YDYDPLNQTR SC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880872.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1891711e-137KF189171.1 Frangula alnus subsp. alnus clone Contig18771 polymorphic genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880870.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_015880871.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_024928499.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-159COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A061DL860.0A0A061DL86_THECC; B-box type zinc finger protein with CCT domain isoform 1
STRINGEOX935730.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-134CONSTANS-like 9