PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015880673.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ARF | ||||||||
Protein Properties | Length: 911aa MW: 100667 Da PI: 6.4037 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.4 | 1.3e-23 | 132 | 233 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_015880673.1 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytMQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 222 99*****************************96555544..8************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_015880673.1 223 KNQLLLGIRRA 233 9999****997 PP | |||||||
2 | Auxin_resp | 118.6 | 5.1e-39 | 258 | 341 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+ S+Wrs+k XP_015880673.1 258 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSSSHWRSVK 341 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.18E-48 | 117 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-42 | 125 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.10E-21 | 131 | 232 | No hit | No description |
SMART | SM01019 | 3.5E-24 | 132 | 234 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.478 | 132 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-21 | 132 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.8E-34 | 258 | 341 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.6E-7 | 767 | 858 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.05E-7 | 769 | 850 | No hit | No description |
PROSITE profile | PS51745 | 24.865 | 776 | 866 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 911 aa Download sequence Send to blast |
MRLSSSSSSS GFNHQPQEGE KKCLNSELWH ACAGPLVSLP PVGSRVVYFP QGHSEQVAAS 60 TNKEVDAHIP NYPNLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSPQE QKDVYLLPAE 120 LGTPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYTMQPPAQ ELIARDLHDN 180 EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM 240 PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG 300 MRFRMLFETE ESSVRRYMGT ITGISDLDPV RWSSSHWRSV KVGWDESTAG ERQPRVSLWE 360 IEPLTTFPMY PSPFPLRLKR PWPSGLPSFH ALKDGDMSIN SPLMWLQGGV GDQGMQSLNF 420 QGFGVTPWVQ PRLDASLPGL QPDLYQAMAA AALQEMRAVD PTKCSSQSLL PFQQSQNVSN 480 GPAGLIQRQM LPQSQSQSTF LQSFQENQAP AQAQLLQQQI QRYHPYSDQR QQQHQQQQQP 540 QLQQSQQLHQ LSVQQHIPNV ISSLSNFASV TQSHSPSLQA IPSQCQQQTF TDPVTNPISS 600 SDVSPMHSIL GSLSQDGGSH LLNLNGSNSV ISSSSLLSKQ ITVEPQLPSG TAQCVLPQVE 660 QLGTPQSSNV SELASLPPFP GREYSSYQGA TDPQSNLLFG VNIDSSSLML QNGMSNLRNI 720 GSENDSLSMP FGSSNYSSAA GTDFPLNSDM TTSSCVDESG FLQSSENVDQ ANPPTRTFVK 780 VHKAGSFGRS LDISKFSSYD ELRSELARMF GLEGQLQDPQ RSGWQLVFVD RENDVLLLGD 840 DPWQEFVNNV WYIKILSPLE VQEMGKNGLN PTSSVPSQKL RNSSNTCDDF VGRQELRNSS 900 NGIASMGSLD Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-164 | 17 | 362 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015880673.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015880673.1 | 0.0 | auxin response factor 6-like | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | W9S1H8 | 0.0 | W9S1H8_9ROSA; Multifunctional fusion protein | ||||
STRING | XP_010106165.1 | 0.0 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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