PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880672.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ARF
Protein Properties Length: 947aa    MW: 104803 Da    PI: 6.2592
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.4e-23132233199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_015880672.1 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytMQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 222
                     99*****************************96555544..8************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_015880672.1 223 KNQLLLGIRRA 233
                     9999****997 PP
2Auxin_resp118.55.4e-39258341183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+ S+Wrs+k
  XP_015880672.1 258 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSSSHWRSVK 341
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.24E-48117261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-42125247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-21131232No hitNo description
PfamPF023621.2E-21132233IPR003340B3 DNA binding domain
SMARTSM010193.5E-24132234IPR003340B3 DNA binding domain
PROSITE profilePS5086312.478132234IPR003340B3 DNA binding domain
PfamPF065077.2E-34258341IPR010525Auxin response factor
PfamPF023094.8E-7803894IPR033389AUX/IAA domain
SuperFamilySSF542771.11E-7805886No hitNo description
PROSITE profilePS5174524.865812902IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    Send to blast
MRLSSSSSSS GFNHQPQEGE KKCLNSELWH ACAGPLVSLP PVGSRVVYFP QGHSEQVAAS  60
TNKEVDAHIP NYPNLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSPQE QKDVYLLPAE  120
LGTPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYTMQPPAQ ELIARDLHDN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLDPV RWSSSHWRSV KVGWDESTAG ERQPRVSLWE  360
IEPLTTFPMY PSPFPLRLKR PWPSGLPSFH GMVVFLLVTG KTLDFFLELC LKFNLFFFDF  420
SDANNSALKD GDMSINSPLM WLQGGVGDQG MQSLNFQGFG VTPWVQPRLD ASLPGLQPDL  480
YQAMAAAALQ EMRAVDPTKC SSQSLLPFQQ SQNVSNGPAG LIQRQMLPQS QSQSTFLQSF  540
QENQAPAQAQ LLQQQIQRYH PYSDQRQQQH QQQQQPQLQQ SQQLHQLSVQ QHIPNVISSL  600
SNFASVTQSH SPSLQAIPSQ CQQQTFTDPV TNPISSSDVS PMHSILGSLS QDGGSHLLNL  660
NGSNSVISSS SLLSKQITVE PQLPSGTAQC VLPQVEQLGT PQSSNVSELA SLPPFPGREY  720
SSYQGATDPQ SNLLFGVNID SSSLMLQNGM SNLRNIGSEN DSLSMPFGSS NYSSAAGTDF  780
PLNSDMTTSS CVDESGFLQS SENVDQANPP TRTFVKVHKA GSFGRSLDIS KFSSYDELRS  840
ELARMFGLEG QLQDPQRSGW QLVFVDREND VLLLGDDPWQ EFVNNVWYIK ILSPLEVQEM  900
GKNGLNPTSS VPSQKLRNSS NTCDDFVGRQ ELRNSSNGIA SMGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1641736243388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880672.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880673.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLW9S1H80.0W9S1H8_9ROSA; Multifunctional fusion protein
STRINGXP_010106165.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]