PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880600.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 469aa    MW: 51412.5 Da    PI: 6.8354
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880600.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.6e-16346391454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksL
  XP_015880600.1 346 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSL 391
                     6*************************8.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-20340406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.559342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-17345396No hitNo description
PfamPF000106.0E-14346391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-20346400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-18348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MLFDILSVWS AMNHCIPDWN FEGIQPVINQ KKPAGPENEL VELLWRNGQV VLQSQTQRKP  60
SFNPTDQPRQ IHKHDQEGIR AGGSFGNSSN LIHDDEAVSW IQYPLEDSFE KEFCSNFFTE  120
LPSCDPSDVE TPPIRQFGEE PKTKPTNNGV PFPENQMPPP RFHYNSSQQN QNLSGLEKMV  180
NLPQIPDAAK GGDLRSSSGQ FGGKDSGGFA QGEVREGSVV TVGLSHCGSN QLLGELDVSR  240
VSSNGDGTTG LSAGHSKEDV QKKHMAQSDR GKTEPSTEPV TSSSGGSGSS FGRTCKQLKG  300
GGNQKRKSRD VEESECQSGA GELESAAANK PSQRSGSTRR SRAAEVHNLS ERRRRDRINE  360
KMKALQELIP HCNKTDKASM LDEAIEYLKS LKLQLQVMWM GSGMAPMMFP GVQHYISRMN  420
MGMGPSALPS MHNPMHLTRV PLVDQSVAVS STTNQPVVCQ TPVLNPINF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350355ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024928698.10.0transcription factor PIF4
TrEMBLA0A2P6S0J70.0A0A2P6S0J7_ROSCH; Putative transcription factor bHLH family
STRINGXP_004303901.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.11e-62phytochrome interacting factor 4