PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880502.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ARF
Protein Properties Length: 800aa    MW: 88293.3 Da    PI: 6.7489
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880502.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.5e-24165266199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + ++
  XP_015880502.1 165 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEN 256
                     99****************************963.3445679************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_015880502.1 257 GELRLGIRRA 266
                     999****996 PP
2Auxin_resp123.81.2e-40291372182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +a+a+stks+F+v+Y+Pras++eFv++++k+ k+++++v++G+Rfkm+f++eds+err+sG+v+g+ dldp+rWpnSkWr+L
  XP_015880502.1 291 VANAISTKSMFHVFYSPRASHAEFVIPYQKYIKSVTNPVTIGTRFKMRFDMEDSPERRCSGVVTGIGDLDPYRWPNSKWRCL 372
                     689******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-44157276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-41158275IPR015300DNA-binding pseudobarrel domain
CDDcd100173.75E-23163265No hitNo description
PROSITE profilePS5086313.042165267IPR003340B3 DNA binding domain
PfamPF023625.8E-22165266IPR003340B3 DNA binding domain
SMARTSM010192.6E-24165267IPR003340B3 DNA binding domain
PfamPF065079.4E-35291372IPR010525Auxin response factor
PfamPF023091.0E-6664756IPR033389AUX/IAA domain
SuperFamilySSF542775.69E-10667751No hitNo description
PROSITE profilePS5174523.055672756IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MEIDLNHAVA EEEKNAFCNG DCDKGCCVCC LSSSTSSCSS NSSSAPVSSS IYLELWHACA  60
GPLTSLPKKG NVVVYFPQGH LEQVASSSPF SPMEMPTFDL QPQIFCKVVN VQLLANKEND  120
EVYTHVTLLP QPELVGMKLE GKELEELGVD EGSGGSPTKS TPHMFCKTLT ASDTSTHGGF  180
SVPRRAAEDC FPPLDYKQQR PSQELVAKDL HGVEWRFRHI YRGQPRRHLL TTGWSIFVSQ  240
KNLVSGDAVL FLRGENGELR LGIRRAVRPR NGLPDSIVGN QNSYPSVLSL VANAISTKSM  300
FHVFYSPRAS HAEFVIPYQK YIKSVTNPVT IGTRFKMRFD MEDSPERRCS GVVTGIGDLD  360
PYRWPNSKWR CLMVRWDEDI GNDRQERVSS WEIDPSVSLP PFSIQSSPRL KKLRTSVQAN  420
LPNNPVTGGG GFLDFEESVR SSKVLQGQEN IGFISPLYGC DSVNHRLDFD MRTPAHQSLA  480
PNTTQKAAIG EFIRAHPTTY PGFAESSRFP KVLQGQEICP LRSLTGKADF SLGAWGKPNL  540
GCTSFNTYQA SKPNFFPLAS ESLQNMYFPY GDSHKPGQNP AMHTSATNFP GENVKTNPYS  600
IQTGVMRNGA GRSNIPNEHK PQESISARPT VGTNLRNSKD DGFTGTATGC KLFGFSLTGE  660
TSTPNSQNSS KRSCTKVHKQ GSLVGRAIDL SRLNGYSDLL SELERLFSME GLLEDPEKGW  720
RILYTDSEND VMVVGDDPWH EFCNVVSKIH IYTQEEVEKM TFGIISDDTQ SCLEQAPVIM  780
EVSKSSSVGQ PDSSPTVIRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-124373952354Auxin response factor 1
4ldy_B1e-124373952354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880502.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880502.20.0auxin response factor 4 isoform X2
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLM5VXH60.0M5VXH6_PRUPE; Auxin response factor
STRINGEMJ061420.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]