PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015880498.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ARF | ||||||||
Protein Properties | Length: 801aa MW: 88364.4 Da PI: 6.7489 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.5e-24 | 165 | 266 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + ++ XP_015880498.1 165 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEN 256 99****************************963.3445679************************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_015880498.1 257 GELRLGIRRA 266 999****996 PP | |||||||
2 | Auxin_resp | 123.8 | 1.2e-40 | 291 | 372 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pras++eFv++++k+ k+++++v++G+Rfkm+f++eds+err+sG+v+g+ dldp+rWpnSkWr+L XP_015880498.1 291 VANAISTKSMFHVFYSPRASHAEFVIPYQKYIKSVTNPVTIGTRFKMRFDMEDSPERRCSGVVTGIGDLDPYRWPNSKWRCL 372 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-44 | 157 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.6E-41 | 158 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.76E-23 | 163 | 265 | No hit | No description |
PROSITE profile | PS50863 | 13.042 | 165 | 267 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.8E-22 | 165 | 266 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-24 | 165 | 267 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.4E-35 | 291 | 372 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.0E-6 | 665 | 757 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 5.69E-10 | 668 | 752 | No hit | No description |
PROSITE profile | PS51745 | 23.055 | 673 | 757 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 801 aa Download sequence Send to blast |
MEIDLNHAVA EEEKNAFCNG DCDKGCCVCC LSSSTSSCSS NSSSAPVSSS IYLELWHACA 60 GPLTSLPKKG NVVVYFPQGH LEQVASSSPF SPMEMPTFDL QPQIFCKVVN VQLLANKEND 120 EVYTHVTLLP QPELVGMKLE GKELEELGVD EGSGGSPTKS TPHMFCKTLT ASDTSTHGGF 180 SVPRRAAEDC FPPLDYKQQR PSQELVAKDL HGVEWRFRHI YRGQPRRHLL TTGWSIFVSQ 240 KNLVSGDAVL FLRGENGELR LGIRRAVRPR NGLPDSIVGN QNSYPSVLSL VANAISTKSM 300 FHVFYSPRAS HAEFVIPYQK YIKSVTNPVT IGTRFKMRFD MEDSPERRCS GVVTGIGDLD 360 PYRWPNSKWR CLMVRWDEDI GNDRQERVSS WEIDPSVSLP PFSIQSSPRL KKLRTSVQAN 420 LPNNPVTAGG GGFLDFEESV RSSKVLQGQE NIGFISPLYG CDSVNHRLDF DMRTPAHQSL 480 APNTTQKAAI GEFIRAHPTT YPGFAESSRF PKVLQGQEIC PLRSLTGKAD FSLGAWGKPN 540 LGCTSFNTYQ ASKPNFFPLA SESLQNMYFP YGDSHKPGQN PAMHTSATNF PGENVKTNPY 600 SIQTGVMRNG AGRSNIPNEH KPQESISARP TVGTNLRNSK DDGFTGTATG CKLFGFSLTG 660 ETSTPNSQNS SKRSCTKVHK QGSLVGRAID LSRLNGYSDL LSELERLFSM EGLLEDPEKG 720 WRILYTDSEN DVMVVGDDPW HEFCNVVSKI HIYTQEEVEK MTFGIISDDT QSCLEQAPVI 780 MEVSKSSSVG QPDSSPTVIR V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-124 | 37 | 395 | 2 | 354 | Auxin response factor 1 |
4ldy_B | 1e-124 | 37 | 395 | 2 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015880498.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015880498.1 | 0.0 | auxin response factor 4 isoform X3 | ||||
Refseq | XP_015880499.1 | 0.0 | auxin response factor 4 isoform X3 | ||||
Refseq | XP_015880500.1 | 0.0 | auxin response factor 4 isoform X3 | ||||
Refseq | XP_024928576.1 | 0.0 | auxin response factor 4 isoform X1 | ||||
Refseq | XP_024928577.1 | 0.0 | auxin response factor 4 isoform X3 | ||||
Refseq | XP_024928578.1 | 0.0 | auxin response factor 4 isoform X3 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | M5VXH6 | 0.0 | M5VXH6_PRUPE; Auxin response factor | ||||
STRING | EMJ06142 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5236 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |