PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015880415.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 430aa MW: 48154.6 Da PI: 8.2704

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015880415.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	335.7	8.5e-103	41	429	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++ L++cA++ +sg+l+ a+++L ++s+las +gd++qRlaa f+ ALa rl+++++++ykal+ ++ ++ e a+++f +++P+l f++ XP_015880415.1 41 LIQHLITCAKHTASGNLHHADSCLRQISHLASISGDSLQRLAARFASALALRLVKHWPGVYKALSYTQRPN--NPELDLARRVFRKAFPYLGFAY 133 6799**********************************************************9999984..556666999********* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 + +++l+++++e +Hi+D++ + W++L++++a p+g p+lRi v+ +k l ++g+rL k A++l+++f++n++ + +l++l XP_015880415.1 134 SIIARTLLQSMSHEGVIHIVDLGSGDTKLWVPLIRSFALLPSGiIPHLRISCVHG----DKAVLDKLGQRLVKEAQALDMTFQYNPINVANLKEL 224 **********************************99965389*****....******************************** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrll......................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 ++ +++ ++gEala +vl+lh ll +e ++ +++L +++s+ Pkvv +veqeadhn +++++r++ +l+ XP_015880415.1 225 DIVMFEQRSGEALAFVSVLNLHALLaeddrvdahffrgkskdagivvKECKQM----EKFLTTIRSMCPKVVLLVEQEADHNLNRLVDRLVGSLN 315 ***********************************98776555444444....55******************************** PP GRAS 263 yysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 yysa+fdsl++++++ s eer +E++ +grei+n++aceg er+erhe++++W r++ aGFkpv+l + ++ k +++ +++dgy++ ++ XP_015880415.1 316 YYSAVFDSLDVTFGSSSslmEERLALEEM-FGREIENIIACEGLERVERHERYGRWLVRFGGAGFKPVRLWFNGLEDCKKMVEAYGKDGYKIVSN 409 **********9999999****.************************************************************* PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 ++slv++W++rpL++vSaW+ XP_015880415.1 410 KASLVICWHERPLYAVSAWT 429 *****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.425	15	409	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-100	41	429	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MNNCSSSSSP SLHPDVTLTL TIPSSSSKAS PLEPEQRGIY LIQHLITCAK HTASGNLHHA 60 DSCLRQISHL ASISGDSLQR LAARFASALA LRLVKHWPGV YKALSYTQRP NNPELDLARR 120 VFRKAFPYLG FAYSIIARTL LQSMSHEGVI HIVDLGSGDT KLWVPLIRSF ALLPSGIIPH 180 LRISCVHGDK AVLDKLGQRL VKEAQALDMT FQYNPINVAN LKELDIVMFE QRSGEALAFV 240 SVLNLHALLA EDDRVDAHFF RGKSKDAGIV VKECKQMEKF LTTIRSMCPK VVLLVEQEAD 300 HNLNRLVDRL VGSLNYYSAV FDSLDVTFGS SSSLMEERLA LEEMFGREIE NIIACEGLER 360 VERHERYGRW LVRFGGAGFK PVRLWFNGLE DCKKMVEAYG KDGYKIVSNK ASLVICWHER 420 PLYAVSAWTC

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MNNCSSSSSP SLHPDVTLTL TIPSSSSKAS PLEPEQRGIY LIQHLITCAK HTASGNLHHA  60
DSCLRQISHL ASISGDSLQR LAARFASALA LRLVKHWPGV YKALSYTQRP NNPELDLARR  120
VFRKAFPYLG FAYSIIARTL LQSMSHEGVI HIVDLGSGDT KLWVPLIRSF ALLPSGIIPH  180
LRISCVHGDK AVLDKLGQRL VKEAQALDMT FQYNPINVAN LKELDIVMFE QRSGEALAFV  240
SVLNLHALLA EDDRVDAHFF RGKSKDAGIV VKECKQMEKF LTTIRSMCPK VVLLVEQEAD  300
HNLNRLVDRL VGSLNYYSAV FDSLDVTFGS SSSLMEERLA LEEMFGREIE NIIACEGLER  360
VERHERYGRW LVRFGGAGFK PVRLWFNGLE DCKKMVEAYG KDGYKIVSNK ASLVICWHER  420
PLYAVSAWTC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-38	35	429	12	378	Protein SCARECROW
5b3h_D	1e-38	35	429	12	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015880415.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015880415.1	0.0	scarecrow-like protein 3
TrEMBL	A0A2I4EBE2	0.0	A0A2I4EBE2_JUGRE; scarecrow-like protein 3
STRING	EOY03782	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15813	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-99	scarecrow-like 3