PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880116.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 282aa    MW: 32153.1 Da    PI: 6.2354
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880116.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.89.1e-3227357128
             NAM  57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v++k+++++g +ktLvfy+grap g +tdWvmheyrl
  XP_015880116.1   2 EWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCKSETVTGYRKTLVFYRGRAPLGDRTDWVMHEYRL 73 
                     8*********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.879196IPR003441NAC domain
SuperFamilySSF1019414.32E-36296IPR003441NAC domain
PfamPF023657.4E-16373IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEWFFFCPRD RKYPNGSRTN RATKAGYWKA TGKDRKVVCK SETVTGYRKT LVFYRGRAPL  60
GDRTDWVMHE YRLSDDFNQS SQNVQGAFAL CRVVKKNEHT QSHGEPKGKK IASSSSYGDF  120
TSTRISNEPL NISGDNSSHA SYQHNESTYS SPVTSPHQVT PAVEMEQSMT ETNPASFWVS  180
PDYILDSSKD YPQLRETMSQ YIPQYEVPSS TTQWQSYEHT DMSPSSSYSN FTGEVELAED  240
FSRIGCMSPY SGHSNYMDFY GNEDMQYDGY NHTGSLGYPN LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-29210172170NO APICAL MERISTEM PROTEIN
1ut4_B8e-29210172170NO APICAL MERISTEM PROTEIN
1ut7_A8e-29210172170NO APICAL MERISTEM PROTEIN
1ut7_B8e-29210172170NO APICAL MERISTEM PROTEIN
3swm_A9e-29210175173NAC domain-containing protein 19
3swm_B9e-29210175173NAC domain-containing protein 19
3swm_C9e-29210175173NAC domain-containing protein 19
3swm_D9e-29210175173NAC domain-containing protein 19
3swp_A9e-29210175173NAC domain-containing protein 19
3swp_B9e-29210175173NAC domain-containing protein 19
3swp_C9e-29210175173NAC domain-containing protein 19
3swp_D9e-29210175173NAC domain-containing protein 19
4dul_A8e-29210172170NAC domain-containing protein 19
4dul_B8e-29210172170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880116.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880116.10.0NAC domain-containing protein 71-like isoform X2
SwissprotO496973e-64NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A2N9HLK81e-149A0A2N9HLK8_FAGSY; Uncharacterized protein
STRINGXP_010104346.11e-142(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-66NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]